Non-Coding RNA Search

Ss1.1-Pig1-76L24.5.5

Sequence:


               
               ACTGTGTGCCAGAAGCCTGTCAGCTGGAGAGCTGGGGGCGATGGCGAAGAACCTGTATGG
TCCCGGAGTCCGGATGGGCAACTGGAACGAGGACGTCTATCTGGAAGAGGAGCGCATGAG
AGACTTCTTAGCAAAGAGGGATGAGGGACAGCTTCTCATACAGAAAAACAGAAGACTGAA
AGAGAATCTTTTGAGACCGATGCAGCTTTCTGTATCCGAAGATGGATACATTCACTATGG
CGACAAAGTGATGCTTGTGAATCCCGACCATCCTGAGGTGGAAGCCGATCTGTTTCTGGG
TGGGGACCTGAGCCTGTGTATGACTCCAGATGAAATTAAAGCCTATCTGAGTGATGAATT
AGAGGTGCCTTGTGGCCTGAGCGCAGCTCAAACCAAGATCCCGGTTGGCAGAAACACTTT
CACCATTTTGTGTGCTGCTGGAGAGGTCATTGGTCAAGTCGTCAGATACGGGCAGAACTT
TCGCCTGGGGATAGCAGGAGGATTTGAGGGCAGAATGTTCTATTTATCAAGTGACCACAG
GACCCTGATGAAGTCGTCTAAGAGGTCTTGGCTCCAGGAGGTGTACCTGACAGATGAGGA
CTCCTACCTGAACTGCTGGCAGGCTGCCTTCCCCGACCCCCAGCTACGCCTGGAGTACGA
AGGCTTCCCCATCCCGGCAAATGCAAAAATTCTTATCAATCACTGCCACACAAATCGAGG
GCTGGTGGCCCACCGGCATCTTTTCTTAAGTACCTATTTTGGAAAGGAAGTGGAGGTCGC
TGCTCACACATATTTGGATTCACACAGAGTGGAGAAGCCCAAGAACCATTGGATGTTGGT
GACTGGGAATCCCAGGAAGAATGCGCCCACCGTATTGGATCTGCCCAAACCGCCAGCAGA
GGGCACCCGAGCCCTGGAGCAGGTGGCCGAGACCCCCGGGAGCAGTACCACACCTGGTGC
GCATGCGTGCTCTCATCCACTCTAGCCTTCCAGGAAATCCTCAATCTTGGTCTAGCCTCA
AGCTATTTTTAAGGAAGGCCAGAGCTCTCTGAACATTGTATTAAAACAAAGGCTATATTA
AGATTATTGAATTAACCACAGAGGTCTAGAACACAGGATAAAAAAAGAAAACCTTGCTCA
GAAATGGTATTTGAAGGTGATGATGATATTCCTTCCTTGATGACCAAATTCTGAAGTCTC
AGCTACCTTCATTTAGATCCTATGTAGCGAAGGCTTCTACAAAGACTGTGTTACTTTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGTGTGCCAGAAGCCTGTCAGCTGGAGAGCTGGGGGCGATGGCGAAGAACCTGTATGG
TCCCGGAGTCCGGATGGGCAACTGGAACGAGGACGTCTATCTGGAAGAGGAGCGCATGAG
AGACTTCTTAGCAAAGAGGGATGAGGGACAGCTTCTCATACAGAAAAACAGAAGACTGAA
AGAGAATCTTTTGAGACCGATGCAGCTTTCTGTATCCGAAGATGGATACATTCACTATGG
CGACAAAGTGATGCTTGTGAATCCCGACCATCCTGAGGTGGAAGCCGATCTGTTTCTGGG
TGGGGACCTGAGCCTGTGTATGACTCCAGATGAAATTAAAGCCTATCTGAGTGATGAATT
AGAGGTGCCTTGTGGCCTGAGCGCAGCTCAAACCAAGATCCCGGTTGGCAGAAACACTTT
CACCATTTTGTGTGCTGCTGGAGAGGTCATTGGTCAAGTCGTCAGATACGGGCAGAACTT
TCGCCTGGGGATAGCAGGAGGATTTGAGGGCAGAATGTTCTATTTATCAAGTGACCACAG
GACCCTGATGAAGTCGTCTAAGAGGTCTTGGCTCCAGGAGGTGTACCTGACAGATGAGGA
CTCCTACCTGAACTGCTGGCAGGCTGCCTTCCCCGACCCCCAGCTACGCCTGGAGTACGA
AGGCTTCCCCATCCCGGCAAATGCAAAAATTCTTATCAATCACTGCCACACAAATCGAGG
GCTGGTGGCCCACCGGCATCTTTTCTTAAGTACCTATTTTGGAAAGGAAGTGGAGGTCGC
TGCTCACACATATTTGGATTCACACAGAGTGGAGAAGCCCAAGAACCATTGGATGTTGGT
GACTGGGAATCCCAGGAAGAATGCGCCCACCGTATTGGATCTGCCCAAACCGCCAGCAGA
GGGCACCCGAGCCCTGGAGCAGGTGGCCGAGACCCCCGGGAGCAGTACCACACCTGGTGC
GCATGCGTGCTCTCATCCACTCTAGCCTTCCAGGAAATCCTCAATCTTGGTCTAGCCTCA
AGCTATTTTTAAGGAAGGCCAGAGCTCTCTGAACATTGTATTAAAACAAAGGCTATATTA
AGATTATTGAATTAACCACAGAGGTCTAGAACACAGGATAAAAAAAGAAAACCTTGCTCA
GAAATGGTATTTGAAGGTGATGATGATATTCCTTCCTTGATGACCAAATTCTGAAGTCTC
AGCTACCTTCATTTAGATCCTATGTAGCGAAGGCTTCTACAAAGACTGTGTTACTTTGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38566033|gb|AAH62471.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38566033|gb|AAH62471.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               276-394, - strand, RNAz p=0.834895

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               276-394, - strand, RNAz p=0.834895

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               5-110, gnl|bosTau2|chr21 (19401544-19401649)
               

               
               5-110, gnl|canFam2|chr3 (59474819-59474608)
               

               
               5-110, gnl|dasNov1|scaffold_94784 (4766-5030)
               

               
               5-110, gnl|hg17|chr15 (79213602-79213852)
               

               
               5-110, gnl|Hg17|chr15 (79213690-79213795)
               

               
               5-110, gnl|loxAfr1|scaffold_10794 (37591-37306)
               

               
               5-110, gnl|mm7|chr7 (79716525-79716266)
               

               
               5-110, gnl|Mm7|chr7 (79716426-79716321)
               

               
               5-110, gnl|monDom2|scaffold_45 (5760038-5759787)
               

               
               5-110, gnl|oryCun1|scaffold_103355 (2774-3005)
               

               
               5-110, gnl|panTro1|chr16 (79940085-79940335)
               

               
               5-110, gnl|rheMac2|chr7 (60287199-60287449)
               

               
               5-110, gnl|rn3|chr1 (140140413-140140180)
               


               
               199-432, gnl|bosTau2|chr21 (19404224-19404457)
               

               
               199-432, gnl|Hg17|chr15 (79215911-79216144)
               

               
               199-432, gnl|Mm7|chr7 (79715025-79714789)
               


               
               517-677, gnl|bosTau2|chr21 (19411083-19411243)
               

               
               517-677, gnl|Hg17|chr15 (79223057-79223217)
               

               
               517-677, gnl|Mm7|chr7 (79701903-79701743)
               


               
               749-1260, gnl|bosTau2|chr21 (19422351-19422885)
               

               
               749-1260, gnl|Hg17|chr15 (79227732-79228246)
               

               
               749-1260, gnl|Mm7|chr7 (79697744-79697233)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-110, gnl|bosTau2|chr21 (19401544-19401649)
               

               
               5-110, gnl|canFam2|chr3 (59474819-59474608)
               

               
               5-110, gnl|dasNov1|scaffold_94784 (4766-5030)
               

               
               5-110, gnl|hg17|chr15 (79213602-79213852)
               

               
               5-110, gnl|Hg17|chr15 (79213690-79213795)
               

               
               5-110, gnl|loxAfr1|scaffold_10794 (37591-37306)
               

               
               5-110, gnl|mm7|chr7 (79716525-79716266)
               

               
               5-110, gnl|Mm7|chr7 (79716426-79716321)
               

               
               5-110, gnl|monDom2|scaffold_45 (5760038-5759787)
               

               
               5-110, gnl|oryCun1|scaffold_103355 (2774-3005)
               

               
               5-110, gnl|panTro1|chr16 (79940085-79940335)
               

               
               5-110, gnl|rheMac2|chr7 (60287199-60287449)
               

               
               5-110, gnl|rn3|chr1 (140140413-140140180)
               


               
               199-432, gnl|bosTau2|chr21 (19404224-19404457)
               

               
               199-432, gnl|Hg17|chr15 (79215911-79216144)
               

               
               199-432, gnl|Mm7|chr7 (79715025-79714789)
               


               
               517-677, gnl|bosTau2|chr21 (19411083-19411243)
               

               
               517-677, gnl|Hg17|chr15 (79223057-79223217)
               

               
               517-677, gnl|Mm7|chr7 (79701903-79701743)
               


               
               749-1260, gnl|bosTau2|chr21 (19422351-19422885)
               

               
               749-1260, gnl|Hg17|chr15 (79227732-79228246)
               

               
               749-1260, gnl|Mm7|chr7 (79697744-79697233)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               cut (0.169924)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               nmm (0.132802)

	5-110, gnl\|bosTau2\|chr21 (19401544-19401649)
	5-110, gnl\|canFam2\|chr3 (59474819-59474608)
	5-110, gnl\|dasNov1\|scaffold_94784 (4766-5030)
	5-110, gnl\|hg17\|chr15 (79213602-79213852)
	5-110, gnl\|Hg17\|chr15 (79213690-79213795)
	5-110, gnl\|loxAfr1\|scaffold_10794 (37591-37306)
	5-110, gnl\|mm7\|chr7 (79716525-79716266)
	5-110, gnl\|Mm7\|chr7 (79716426-79716321)
	5-110, gnl\|monDom2\|scaffold_45 (5760038-5759787)
	5-110, gnl\|oryCun1\|scaffold_103355 (2774-3005)
	5-110, gnl\|panTro1\|chr16 (79940085-79940335)
	5-110, gnl\|rheMac2\|chr7 (60287199-60287449)
	5-110, gnl\|rn3\|chr1 (140140413-140140180)

	199-432, gnl\|bosTau2\|chr21 (19404224-19404457)
	199-432, gnl\|Hg17\|chr15 (79215911-79216144)
	199-432, gnl\|Mm7\|chr7 (79715025-79714789)

	517-677, gnl\|bosTau2\|chr21 (19411083-19411243)
	517-677, gnl\|Hg17\|chr15 (79223057-79223217)
	517-677, gnl\|Mm7\|chr7 (79701903-79701743)

	749-1260, gnl\|bosTau2\|chr21 (19422351-19422885)
	749-1260, gnl\|Hg17\|chr15 (79227732-79228246)
	749-1260, gnl\|Mm7\|chr7 (79697744-79697233)