Non-Coding RNA Search

Ss1.1-Pig1-77K07.5

Sequence:


               
               CGAGATCCTGCAGGCCGTGGGCGGCGCGCCGGGGACTGGCAGCTACGGGCCCGAGTGTGA
CTGGTGGGCGCTGGGCGTGTTCGCCTATGAAATGTTCTATGGGCAGACGCCCTTCTACGC
TGACTCCACGGCTGAGACCTACGGCAAGATCGTGCACTACAAGGAGCACCTGTCTCTACC
GCTGGCAGATGCAGGGGTCCCTGAGGAGGCTCGCGACCTCATCCAGCAGCTGCTGTGTCC
GCGGGAGATGCGCCTGGGCCGGAATGGAGCAGGCGATTTCCAGAAGCATCCTTTCTTTTT
TGGCCTTGACTGGGACAGCCTCCGAGACAGCGTGCCTCCCTTTACACCAGATTTTGACAG
TGCCACGGACACGTGCAACTTCGATGTGGTGGAAGATGGGCTCACTGCCATGGTGAGCGG
GGGCGGGGAGACGCTGTCAGATATTGGGGAAGGCATGCCCCTGGGGGTCCACCTGCCTTT
CGTGGGCTACTCCTACTCCTGCATGGCCCTCAGGGACGAGGAGATCCTGGGCTCCACGCC
CATGGAACTGGAGGCCGAGCCGTTGCCTGAGCCATTGCAAGAGCCCAGCCTGGAACCCAC
AGTGCCCGGATCAGAGGAAACAGCTGAAGTGGCAGTTCCAGAGGCCATTCTGGAGCCGGT
GGCAGAAGCCGAGGTGACGCTGCGGGAGCTCCAAGAGGCCTTGGAGGAGGAGGTGCTTAG
CCGGCAGAGCTTGAGCCAGGAGCTAGAGGCCATCCGTTTGGCCAACCAGAACTTCGCCAG
TCAACTCCAGGAGGCCCAGGCCCGGAACCGAGACCTGGAGGCGCACGTTCGGCAGCTGCA
GGAGCGGATGGAGTTGCTTCAGGCCGAGGGAGCCGCAGCTGTCACGGGGGTCCCCAGTCC
CCGGGCCATGGATCCACCTTCCCATCTAGATGGCCCCCCGGCCGTGGCTCTGGGCCAGTG
CCCGCTGGTGGGGCCAGGCCCCATGCACCGGCGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGATCCTGCAGGCCGTGGGCGGCGCGCCGGGGACTGGCAGCTACGGGCCCGAGTGTGA
CTGGTGGGCGCTGGGCGTGTTCGCCTATGAAATGTTCTATGGGCAGACGCCCTTCTACGC
TGACTCCACGGCTGAGACCTACGGCAAGATCGTGCACTACAAGGAGCACCTGTCTCTACC
GCTGGCAGATGCAGGGGTCCCTGAGGAGGCTCGCGACCTCATCCAGCAGCTGCTGTGTCC
GCGGGAGATGCGCCTGGGCCGGAATGGAGCAGGCGATTTCCAGAAGCATCCTTTCTTTTT
TGGCCTTGACTGGGACAGCCTCCGAGACAGCGTGCCTCCCTTTACACCAGATTTTGACAG
TGCCACGGACACGTGCAACTTCGATGTGGTGGAAGATGGGCTCACTGCCATGGTGAGCGG
GGGCGGGGAGACGCTGTCAGATATTGGGGAAGGCATGCCCCTGGGGGTCCACCTGCCTTT
CGTGGGCTACTCCTACTCCTGCATGGCCCTCAGGGACGAGGAGATCCTGGGCTCCACGCC
CATGGAACTGGAGGCCGAGCCGTTGCCTGAGCCATTGCAAGAGCCCAGCCTGGAACCCAC
AGTGCCCGGATCAGAGGAAACAGCTGAAGTGGCAGTTCCAGAGGCCATTCTGGAGCCGGT
GGCAGAAGCCGAGGTGACGCTGCGGGAGCTCCAAGAGGCCTTGGAGGAGGAGGTGCTTAG
CCGGCAGAGCTTGAGCCAGGAGCTAGAGGCCATCCGTTTGGCCAACCAGAACTTCGCCAG
TCAACTCCAGGAGGCCCAGGCCCGGAACCGAGACCTGGAGGCGCACGTTCGGCAGCTGCA
GGAGCGGATGGAGTTGCTTCAGGCCGAGGGAGCCGCAGCTGTCACGGGGGTCCCCAGTCC
CCGGGCCATGGATCCACCTTCCCATCTAGATGGCCCCCCGGCCGTGGCTCTGGGCCAGTG
CCCGCTGGTGGGGCCAGGCCCCATGCACCGGCGCCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|47059024|ref|NP_004400.4|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|47059024|ref|NP_004400.4|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               508-621, - strand, RNAz p=0.841673

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               508-621, - strand, RNAz p=0.841673

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               162-428, gnl|bosTau2|chr18 (38188620-38188886)
               

               
               162-428, gnl|Hg17|chr19 (50972690-50972424)
               

               
               162-428, gnl|Mm7|chr7 (16770373-16770639)
               


               
               508-621, gnl|bosTau2|chr18 (38190979-38191092)
               

               
               508-621, gnl|Hg17|chr19 (50967856-50967740)
               

               
               508-621, gnl|Mm7|chr7 (16773297-16773413)
               


               
               623-780, gnl|bosTau2|chr18 (38191838-38191995)
               

               
               623-780, gnl|Hg17|chr19 (50967026-50966869)
               

               
               623-780, gnl|Mm7|chr7 (16774055-16774218)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               162-428, gnl|bosTau2|chr18 (38188620-38188886)
               

               
               162-428, gnl|Hg17|chr19 (50972690-50972424)
               

               
               162-428, gnl|Mm7|chr7 (16770373-16770639)
               


               
               508-621, gnl|bosTau2|chr18 (38190979-38191092)
               

               
               508-621, gnl|Hg17|chr19 (50967856-50967740)
               

               
               508-621, gnl|Mm7|chr7 (16773297-16773413)
               


               
               623-780, gnl|bosTau2|chr18 (38191838-38191995)
               

               
               623-780, gnl|Hg17|chr19 (50967026-50966869)
               

               
               623-780, gnl|Mm7|chr7 (16774055-16774218)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eru (0.120048)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	162-428, gnl\|bosTau2\|chr18 (38188620-38188886)
	162-428, gnl\|Hg17\|chr19 (50972690-50972424)
	162-428, gnl\|Mm7\|chr7 (16770373-16770639)

	508-621, gnl\|bosTau2\|chr18 (38190979-38191092)
	508-621, gnl\|Hg17\|chr19 (50967856-50967740)
	508-621, gnl\|Mm7\|chr7 (16773297-16773413)

	623-780, gnl\|bosTau2\|chr18 (38191838-38191995)
	623-780, gnl\|Hg17\|chr19 (50967026-50966869)
	623-780, gnl\|Mm7\|chr7 (16774055-16774218)