Non-Coding RNA Search

Ss1.1-Pig1-78D10.5

Sequence:


               
               GGCCTCCAGATGTGGCAGGTAGTAGATCAGTGCTCAGAAATTCTTAAAGAACTGGAGAAC
TCAGGTGGTGGACTTTCAGCCCGGGCAGCCACCCCTTTCCACGCACTTCTTTCCACCACA
GCCTCTCCAGGAGGCTGGTGCATTCGCTCTTCCTCTTTCCAGACCCCAGCGCAGGCTTCG
GCTTCTACTGAGAGCCCCGTTGTAGGGGACGGCAGTGAACTGGGAGAGGTGTTGCAGATT
CAAGTGGAGGAAGAGGAGGAGGAGGAAGAAGAGGAGGAAGAGGAGGGCCAGAGGTCGGCA
GCATCCTCTCAGACTCCGCAGCCTCCAAGAGCATCAGGGAGCTTTCCCCGCCCTCCTGGA
TCCCACACGCTGCCCACATCCAGTACTCCACGCAGGCTTCCAGAGGGTGACAGCGCTCTG
CTGGAGCCTCCTGCCCCTCACACTGCGCTGCCCCCCAAGATATTCTACATTAAGCAGGAA
CCCTTTGAGCCCAAGGAGGAGATAGTAGGAGGCGGAACGCAATCTGGAGGATCGAAGGAA
GAGACCGGAGTGCTTCCTGCAGGGGACGTGGAAGGGAACGGGGAGCTGGGCTTCTTGCTG
CCCTCAGGCGCAGGGTCAACATCGGGAGGAGGAGGTCCATCCTGGAAGCCGGTGGATCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTCCAGATGTGGCAGGTAGTAGATCAGTGCTCAGAAATTCTTAAAGAACTGGAGAAC
TCAGGTGGTGGACTTTCAGCCCGGGCAGCCACCCCTTTCCACGCACTTCTTTCCACCACA
GCCTCTCCAGGAGGCTGGTGCATTCGCTCTTCCTCTTTCCAGACCCCAGCGCAGGCTTCG
GCTTCTACTGAGAGCCCCGTTGTAGGGGACGGCAGTGAACTGGGAGAGGTGTTGCAGATT
CAAGTGGAGGAAGAGGAGGAGGAGGAAGAAGAGGAGGAAGAGGAGGGCCAGAGGTCGGCA
GCATCCTCTCAGACTCCGCAGCCTCCAAGAGCATCAGGGAGCTTTCCCCGCCCTCCTGGA
TCCCACACGCTGCCCACATCCAGTACTCCACGCAGGCTTCCAGAGGGTGACAGCGCTCTG
CTGGAGCCTCCTGCCCCTCACACTGCGCTGCCCCCCAAGATATTCTACATTAAGCAGGAA
CCCTTTGAGCCCAAGGAGGAGATAGTAGGAGGCGGAACGCAATCTGGAGGATCGAAGGAA
GAGACCGGAGTGCTTCCTGCAGGGGACGTGGAAGGGAACGGGGAGCTGGGCTTCTTGCTG
CCCTCAGGCGCAGGGTCAACATCGGGAGGAGGAGGTCCATCCTGGAAGCCGGTGGATCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               302-541, - strand, RNAz p=0.996446

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               302-541, - strand, RNAz p=0.996446

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr23 (6014894-6015532)
               

               
               1-660, gnl|Hg17|chr6 (33531225-33531899)
               

               
               1-660, gnl|Mm7|chr17 (25158768-25159400)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr23 (6014894-6015532)
               

               
               1-660, gnl|Hg17|chr6 (33531225-33531899)
               

               
               1-660, gnl|Mm7|chr17 (25158768-25159400)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-660, gnl\|bosTau2\|chr23 (6014894-6015532)
	1-660, gnl\|Hg17\|chr6 (33531225-33531899)
	1-660, gnl\|Mm7\|chr17 (25158768-25159400)