Non-Coding RNA Search

Ss1.1-Pig1-79H19.5

Sequence:


               
               GAATTCCTGTGCTCGGGCCACAGAAGTCAAGGAGGAGCCCTCGGTTTGGCCGGGCAAGAA
AACAACCATCCAGCTTACACATGAGCAACAGCTGATTCTGAGCCATAAGATGGAGCCTCT
CCAGGTGGTAAAGATTATGGCATTTGCAGGCACTGGGAAGACCTCGACCCTGGTCAAGTA
CGCGGAGAAGTGGTCGGAGAGCAGGTTTCTGTACGTGACCTTCAACAAGAGCATCGCCAA
GCAGGCCGAGCTCGTCTTCCCCAGCAACGTCACCTGCAAGACCTTCCACTCCATGGCCTA
CGGCCACGTCGGGCGCAAGTACCAGCTGAAGAAGAAGTTGAATCTCTTCAAGCTAACACC
CTTCATGGTCAGCTCGGTGCTGGCGGAGGGGAAGGGTGGCTTCATAAGGGCCAAGCTGGT
GTGTAAGACGCTGGAGAACTTCTTCGCCTCGGCCGACGAGGAGCTCACGATCGATCACGT
GCCCATCTGGTGTAAGAACAGCCAAGGACAGAGGGTCATGGTGGAGCAGAGTGAGAAGCT
GAACGGTGTCCTGGAAGCCAGCCGGCTCTGGGACAACATGCGCAAGCTGGGCGAGTGCAA
GGAAGAGGCTTACCAGATGACCCACGACGGCTACCTGAAGCTCTGGCAGCTCAGCAAGCC
GCTGCTGGCCTCCTTCGATGCCATCTTTGTGGACGAGGCCCAGGATTGCACCCCGGCCAT
CATGAACATCGTGCTGTCCCAGCCGTGTGGCAAGATCTTCGTGGGCGACCCCCACCAGCA
GATCTACACCTTCCGCGGCGCCGTCAACGCCCTCTTCACCGTCCCTCACACGCACGTCTT
CTATCTCACGCAGAGCTTCCGATTTGGCGTGGAAATAGCCTACGTGGGAGCTACGATCTT
GGACGTCTGCAAGAGAGTGAGGAAGAAGACTTTGGTCGGAGGAAACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTCCTGTGCTCGGGCCACAGAAGTCAAGGAGGAGCCCTCGGTTTGGCCGGGCAAGAA
AACAACCATCCAGCTTACACATGAGCAACAGCTGATTCTGAGCCATAAGATGGAGCCTCT
CCAGGTGGTAAAGATTATGGCATTTGCAGGCACTGGGAAGACCTCGACCCTGGTCAAGTA
CGCGGAGAAGTGGTCGGAGAGCAGGTTTCTGTACGTGACCTTCAACAAGAGCATCGCCAA
GCAGGCCGAGCTCGTCTTCCCCAGCAACGTCACCTGCAAGACCTTCCACTCCATGGCCTA
CGGCCACGTCGGGCGCAAGTACCAGCTGAAGAAGAAGTTGAATCTCTTCAAGCTAACACC
CTTCATGGTCAGCTCGGTGCTGGCGGAGGGGAAGGGTGGCTTCATAAGGGCCAAGCTGGT
GTGTAAGACGCTGGAGAACTTCTTCGCCTCGGCCGACGAGGAGCTCACGATCGATCACGT
GCCCATCTGGTGTAAGAACAGCCAAGGACAGAGGGTCATGGTGGAGCAGAGTGAGAAGCT
GAACGGTGTCCTGGAAGCCAGCCGGCTCTGGGACAACATGCGCAAGCTGGGCGAGTGCAA
GGAAGAGGCTTACCAGATGACCCACGACGGCTACCTGAAGCTCTGGCAGCTCAGCAAGCC
GCTGCTGGCCTCCTTCGATGCCATCTTTGTGGACGAGGCCCAGGATTGCACCCCGGCCAT
CATGAACATCGTGCTGTCCCAGCCGTGTGGCAAGATCTTCGTGGGCGACCCCCACCAGCA
GATCTACACCTTCCGCGGCGCCGTCAACGCCCTCTTCACCGTCCCTCACACGCACGTCTT
CTATCTCACGCAGAGCTTCCGATTTGGCGTGGAAATAGCCTACGTGGGAGCTACGATCTT
GGACGTCTGCAAGAGAGTGAGGAAGAAGACTTTGGTCGGAGGAAACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12698200|dbj|BAB21927.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12698200|dbj|BAB21927.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               56-157, gnl|bosTau2|chr13 (8801814-8801915)
               

               
               56-157, gnl|Hg17|chr10 (5996146-5996246)
               

               
               56-157, gnl|Mm7|chr2 (11699180-11699079)
               


               
               306-541, gnl|bosTau2|chr13 (8803462-8803697)
               

               
               306-541, gnl|Hg17|chr10 (5998190-5998425)
               

               
               306-541, gnl|Mm7|chr2 (11696837-11696598)
               


               
               716-853, gnl|bosTau2|chr13 (8805409-8805546)
               

               
               716-853, gnl|Hg17|chr10 (6000310-6000447)
               

               
               716-853, gnl|Mm7|chr2 (11694936-11694799)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-157, gnl|bosTau2|chr13 (8801814-8801915)
               

               
               56-157, gnl|Hg17|chr10 (5996146-5996246)
               

               
               56-157, gnl|Mm7|chr2 (11699180-11699079)
               


               
               306-541, gnl|bosTau2|chr13 (8803462-8803697)
               

               
               306-541, gnl|Hg17|chr10 (5998190-5998425)
               

               
               306-541, gnl|Mm7|chr2 (11696837-11696598)
               


               
               716-853, gnl|bosTau2|chr13 (8805409-8805546)
               

               
               716-853, gnl|Hg17|chr10 (6000310-6000447)
               

               
               716-853, gnl|Mm7|chr2 (11694936-11694799)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	56-157, gnl\|bosTau2\|chr13 (8801814-8801915)
	56-157, gnl\|Hg17\|chr10 (5996146-5996246)
	56-157, gnl\|Mm7\|chr2 (11699180-11699079)

	306-541, gnl\|bosTau2\|chr13 (8803462-8803697)
	306-541, gnl\|Hg17\|chr10 (5998190-5998425)
	306-541, gnl\|Mm7\|chr2 (11696837-11696598)

	716-853, gnl\|bosTau2\|chr13 (8805409-8805546)
	716-853, gnl\|Hg17\|chr10 (6000310-6000447)
	716-853, gnl\|Mm7\|chr2 (11694936-11694799)