Non-Coding RNA Search

Ss1.1-Pig1-79I12.5

Sequence:


               
               CCTGCCTGCAGTCCCAGCATCCTCCCCTCCTCCCCTTAACTGGAGACCACCCAAGACTCC
CACCCCACACTGGGCAGTATTGAAATGGGACTGGATGTAGCACATGTCTCCTCCTTCCCA
TAACATGCATGCTCTTAACCTCCCACTTTTGTGGGGGGCTTTTGAGGACCCACCAGGGTC
AGGAGTTTAATCTCTTGTTGAGACTTCAGAAGGTCCACTTCAGCTAAGAGATGCCCAGGT
CCCCAGCTTGCCCTGAGCAATTCCTCAGGGTTCCCACTTCTGTCCACCACCCATCCTGAG
ACCTTAGACATCGGAGGAGCCACACAGCCCAGTGGAAGGCGGTGGCCCTGGCCTCTGTGC
TGGGAGCCCAGTGGGGAACCTTCATGCCTTATTTGTTTCTAAGGGGTAAAGGGGTTTTCT
TAACAAGCAGGCCCGACCTCCCTGGAGGCGCCACCCTGCTCTCCGGGCGGCACCGTGATG
AGCCCTGTCCGCTGGTCCTTCCGTTTCACACATCTCGGAACCCTTTGTCTTTGGTGCTGG
GCAGCGCCCAGCCCCTCTGTGTGTCATTGTCATCTGGGTGGAGGGGATGGGGTGGGATGG
GTCGGGGAAGGGCTCCTGCCTGTTTGCTCCCCAGTTCTGTAGCTGCCCACCAGCGTCACC
TTTGAAGTGTACATGAGAGAAATATATTTACAAATGCTTTATTCTCTTCTTTAATAAAAA
ACGCAGCAGTATTCTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCCTGCAGTCCCAGCATCCTCCCCTCCTCCCCTTAACTGGAGACCACCCAAGACTCC
CACCCCACACTGGGCAGTATTGAAATGGGACTGGATGTAGCACATGTCTCCTCCTTCCCA
TAACATGCATGCTCTTAACCTCCCACTTTTGTGGGGGGCTTTTGAGGACCCACCAGGGTC
AGGAGTTTAATCTCTTGTTGAGACTTCAGAAGGTCCACTTCAGCTAAGAGATGCCCAGGT
CCCCAGCTTGCCCTGAGCAATTCCTCAGGGTTCCCACTTCTGTCCACCACCCATCCTGAG
ACCTTAGACATCGGAGGAGCCACACAGCCCAGTGGAAGGCGGTGGCCCTGGCCTCTGTGC
TGGGAGCCCAGTGGGGAACCTTCATGCCTTATTTGTTTCTAAGGGGTAAAGGGGTTTTCT
TAACAAGCAGGCCCGACCTCCCTGGAGGCGCCACCCTGCTCTCCGGGCGGCACCGTGATG
AGCCCTGTCCGCTGGTCCTTCCGTTTCACACATCTCGGAACCCTTTGTCTTTGGTGCTGG
GCAGCGCCCAGCCCCTCTGTGTGTCATTGTCATCTGGGTGGAGGGGATGGGGTGGGATGG
GTCGGGGAAGGGCTCCTGCCTGTTTGCTCCCCAGTTCTGTAGCTGCCCACCAGCGTCACC
TTTGAAGTGTACATGAGAGAAATATATTTACAAATGCTTTATTCTCTTCTTTAATAAAAA
ACGCAGCAGTATTCTAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-721, gnl|bosTau2|chr19 (50983766-50984446)
               

               
               13-721, gnl|Hg17|chr17 (70512762-70513465)
               

               
               13-721, gnl|Mm7|chr11 (115504277-115505159)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-721, gnl|bosTau2|chr19 (50983766-50984446)
               

               
               13-721, gnl|Hg17|chr17 (70512762-70513465)
               

               
               13-721, gnl|Mm7|chr11 (115504277-115505159)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cte (0.29274)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	13-721, gnl\|bosTau2\|chr19 (50983766-50984446)
	13-721, gnl\|Hg17\|chr17 (70512762-70513465)
	13-721, gnl\|Mm7\|chr11 (115504277-115505159)

	cte (0.29274)
	cje (0.165235)
	csp (0.161186)
	cov (0.132153)
	eep (0.122564)
	eru (0.120048)
	eje (0.0988338)