Non-Coding RNA Search

Ss1.1-Pig1-80E21.5

Sequence:


               
               GGAAGAGCGGCCAGGCCAATATGGCTTCCTGCACCTGGTGACGGTCGAAGAAAGGGTGTT
AGGTCTCATGGAGAAGCCCCGGGGCGTCGAGGAGACTCCGTCTTCGGAACCCATGGAGGA
GGAAGAGGAGGAGGAGGATTTGGAGCTCTTCGGTGGCTATGACAGTTTCCGGAGTTATAA
CAGCAGTGCCGGCAGTGAGAGCAGCTCCTACCTAGAGGAGTCAAGTGAAGCAGAAAATGA
AGACCGCGAAGCTGGGGAGCTGCCCACCTCCCCGCTGCATTTGCTCAGCCCTGGGACTCC
CCGCTCCTTGGACGGCAGTGGTTCTGAGCCAGCTGTCTGTGAGATGTGTGGTATCGTGGG
TACAAGGGAAGCCTTCTTCTCCAAGACCAAGAGATTCTGCAGTGTCTCCTGTTCCAGGAG
CTACTCCTCCAACTCCAAGAAAGCCAGTATCCTGGCGAGATTACAGGGAAAACCACCTAC
CAAGAAAGCCAAAGTTCTGCACAAAGCTGCCTGGTCTGCCAAAATTGGAGCCTTCCTCCA
CTCCCAAGGGACCGGACAGCTCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGAGCGGCCAGGCCAATATGGCTTCCTGCACCTGGTGACGGTCGAAGAAAGGGTGTT
AGGTCTCATGGAGAAGCCCCGGGGCGTCGAGGAGACTCCGTCTTCGGAACCCATGGAGGA
GGAAGAGGAGGAGGAGGATTTGGAGCTCTTCGGTGGCTATGACAGTTTCCGGAGTTATAA
CAGCAGTGCCGGCAGTGAGAGCAGCTCCTACCTAGAGGAGTCAAGTGAAGCAGAAAATGA
AGACCGCGAAGCTGGGGAGCTGCCCACCTCCCCGCTGCATTTGCTCAGCCCTGGGACTCC
CCGCTCCTTGGACGGCAGTGGTTCTGAGCCAGCTGTCTGTGAGATGTGTGGTATCGTGGG
TACAAGGGAAGCCTTCTTCTCCAAGACCAAGAGATTCTGCAGTGTCTCCTGTTCCAGGAG
CTACTCCTCCAACTCCAAGAAAGCCAGTATCCTGGCGAGATTACAGGGAAAACCACCTAC
CAAGAAAGCCAAAGTTCTGCACAAAGCTGCCTGGTCTGCCAAAATTGGAGCCTTCCTCCA
CTCCCAAGGGACCGGACAGCTCGC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               90-338, gnl|bosTau2|chr5 (71074192-71074440)
               

               
               90-338, gnl|Hg17|chr22 (39930198-39930443)
               

               
               90-338, gnl|Mm7|chr15 (81751552-81751797)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-338, gnl|bosTau2|chr5 (71074192-71074440)
               

               
               90-338, gnl|Hg17|chr22 (39930198-39930443)
               

               
               90-338, gnl|Mm7|chr15 (81751552-81751797)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fce (0.271592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	90-338, gnl\|bosTau2\|chr5 (71074192-71074440)
	90-338, gnl\|Hg17\|chr22 (39930198-39930443)
	90-338, gnl\|Mm7\|chr15 (81751552-81751797)