Non-Coding RNA Search

Ss1.1-Pig1-80H18.5

Sequence:


               
               CCTTCGGCGGGCTTTTCGGGGACCAAGATGTCTATGGCCAGCGATTTCTACCTGCGCTAC
TACGTAGGACACAAGGGCAAGTTTGGACACGAGTTTCTGGAGTTCGAGTTTCGGCCGGAC
GGAAAACTTAGATACGCCAACAACAGCAATTATAAAAATGATGTCATGATCAGAAAGGAG
GCTTATGTACACAAGAGTGTAATGGAAGAACTGAAGAGAATTATTGACGACAGTGAAATT
ACAAAGGAAGATGATGCTTTGTGGCCTCCTCCTGACAGGGTTGGTCGGCAGGAGCTTGAA
ATCGTGATTGGAGATGAACACATTTCTTTCACCACATCAAAAATAGGTTCTCTTATTGAT
GTTAATCAGTCAAAGGATCCTGAAGGCCTTCGAGTATTTTATTACTTGGTACAGGACCTG
AAATGTTTAGTTTTTAGTCTTATTGGATTACATTTCAAGATTAAACCAATCTAAATTGTA
TGTTTTTTTGAAACTTTTTATATTTAATTAAGGGATGGGTGAGGGAGGGGTTGTCATTTA
TAATACTGGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTCGGCGGGCTTTTCGGGGACCAAGATGTCTATGGCCAGCGATTTCTACCTGCGCTAC
TACGTAGGACACAAGGGCAAGTTTGGACACGAGTTTCTGGAGTTCGAGTTTCGGCCGGAC
GGAAAACTTAGATACGCCAACAACAGCAATTATAAAAATGATGTCATGATCAGAAAGGAG
GCTTATGTACACAAGAGTGTAATGGAAGAACTGAAGAGAATTATTGACGACAGTGAAATT
ACAAAGGAAGATGATGCTTTGTGGCCTCCTCCTGACAGGGTTGGTCGGCAGGAGCTTGAA
ATCGTGATTGGAGATGAACACATTTCTTTCACCACATCAAAAATAGGTTCTCTTATTGAT
GTTAATCAGTCAAAGGATCCTGAAGGCCTTCGAGTATTTTATTACTTGGTACAGGACCTG
AAATGTTTAGTTTTTAGTCTTATTGGATTACATTTCAAGATTAAACCAATCTAAATTGTA
TGTTTTTTTGAAACTTTTTATATTTAATTAAGGGATGGGTGAGGGAGGGGTTGTCATTTA
TAATACTGGGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57106514|ref|XP_534889.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57106514|ref|XP_534889.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               40-443, gnl|bosTau2|chr11 (25096057-25096459)
               

               
               40-443, gnl|Hg17|chr17 (10560548-10560146)
               

               
               40-443, gnl|Mm7|chr4 (107256303-107263684)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-443, gnl|bosTau2|chr11 (25096057-25096459)
               

               
               40-443, gnl|Hg17|chr17 (10560548-10560146)
               

               
               40-443, gnl|Mm7|chr4 (107256303-107263684)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               duo (0.172801)
               

               
               ski (0.146735)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               ski (0.146735)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

	40-443, gnl\|bosTau2\|chr11 (25096057-25096459)
	40-443, gnl\|Hg17\|chr17 (10560548-10560146)
	40-443, gnl\|Mm7\|chr4 (107256303-107263684)