Non-Coding RNA Search

Ss1.1-Pig1-81E09.5

Sequence:


               
               GGCCCCTGCTTTCCCCTGCCCCACACCCACAGGCTGCTCCAGCCCATTCACCACCCCCCC
ATTCACATGCTCCAGCTCTTCCTTCAGGCTGGGGCCCTGGCCATTGACACCAAAAGTGTC
CCCTACCTCCAAGGCCATGTCCTCCACCCCACCGAGGGTCTCCAGAGGGCCGGGGATGTG
GTCCTGCCTCTCCAAGGGAGCAGCAGCGGACTCTTCCTCTGAGCCCAAGGCCTCAGCGCT
GTCCTGGGACCCAGTCTCCAGGGCAGTCATGGGGGCATCGAATGCCACGCCCCTCGAGCC
GTCATCCCAGGGGACACTGACATCCACGGCCTCAGACCCCAGGAGGCTCCCTCTCTGAGG
GTCACTCAGGGCCGGGAGGCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCCTGCTTTCCCCTGCCCCACACCCACAGGCTGCTCCAGCCCATTCACCACCCCCCC
ATTCACATGCTCCAGCTCTTCCTTCAGGCTGGGGCCCTGGCCATTGACACCAAAAGTGTC
CCCTACCTCCAAGGCCATGTCCTCCACCCCACCGAGGGTCTCCAGAGGGCCGGGGATGTG
GTCCTGCCTCTCCAAGGGAGCAGCAGCGGACTCTTCCTCTGAGCCCAAGGCCTCAGCGCT
GTCCTGGGACCCAGTCTCCAGGGCAGTCATGGGGGCATCGAATGCCACGCCCCTCGAGCC
GTCATCCCAGGGGACACTGACATCCACGGCCTCAGACCCCAGGAGGCTCCCTCTCTGAGG
GTCACTCAGGGCCGGGAGGCTGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-357, - strand, RNAz p=0.999788

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-357, - strand, RNAz p=0.999788

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               162-346, AV610728 Bos taurus lung fetus Bos taurus cDNA clone E1LU034C04 5', 
(dbj|AV610728.1|), blast E-value=1e-34, identity=85.41% 
               

               
               138-345, AV666506 Bos taurus adipocyte cell line Bos taurus cDNA clone 
(dbj|AV666506.1|), blast E-value=5.00264e-43, identity=86.06% 
               

               
               138-346, 209521 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE755628.1|), 
blast E-value=9.94922e-44, identity=86.12% 
               

               
               138-346, LB03023.CR_K01 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV931728.1|), 
blast E-value=9.94922e-44, identity=86.12% 
               

               
               138-346, LB03024.CR_A05 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV931858.1|), 
blast E-value=9.94922e-44, identity=86.12% 
               

               
               157-346, 001130BFMA006773HT BFMA Bos taurus cDNA, mRNA sequence 
(gb|DY108645.1|), blast E-value=5e-37, identity=85.79%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               162-346, AV610728 Bos taurus lung fetus Bos taurus cDNA clone E1LU034C04 5', 
(dbj|AV610728.1|), blast E-value=1e-34, identity=85.41% 
               

               
               138-345, AV666506 Bos taurus adipocyte cell line Bos taurus cDNA clone 
(dbj|AV666506.1|), blast E-value=5.00264e-43, identity=86.06% 
               

               
               138-346, 209521 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE755628.1|), 
blast E-value=9.94922e-44, identity=86.12% 
               

               
               138-346, LB03023.CR_K01 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV931728.1|), 
blast E-value=9.94922e-44, identity=86.12% 
               

               
               138-346, LB03024.CR_A05 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV931858.1|), 
blast E-value=9.94922e-44, identity=86.12% 
               

               
               157-346, 001130BFMA006773HT BFMA Bos taurus cDNA, mRNA sequence 
(gb|DY108645.1|), blast E-value=5e-37, identity=85.79%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-384, gnl|bosTau2|chr3 (11007552-11007910)
               

               
               2-384, gnl|Hg17|chr1 (153452344-153452723)
               

               
               2-384, gnl|Mm7|chr3 (88093676-88093316)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-384, gnl|bosTau2|chr3 (11007552-11007910)
               

               
               2-384, gnl|Hg17|chr1 (153452344-153452723)
               

               
               2-384, gnl|Mm7|chr3 (88093676-88093316)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	162-346, AV610728 Bos taurus lung fetus Bos taurus cDNA clone E1LU034C04 5', (dbj\|AV610728.1\|), blast E-value=1e-34, identity=85.41%
	138-345, AV666506 Bos taurus adipocyte cell line Bos taurus cDNA clone (dbj\|AV666506.1\|), blast E-value=5.00264e-43, identity=86.06%
	138-346, 209521 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE755628.1\|), blast E-value=9.94922e-44, identity=86.12%
	138-346, LB03023.CR_K01 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|DV931728.1\|), blast E-value=9.94922e-44, identity=86.12%
	138-346, LB03024.CR_A05 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|DV931858.1\|), blast E-value=9.94922e-44, identity=86.12%
	157-346, 001130BFMA006773HT BFMA Bos taurus cDNA, mRNA sequence (gb\|DY108645.1\|), blast E-value=5e-37, identity=85.79%

	2-384, gnl\|bosTau2\|chr3 (11007552-11007910)
	2-384, gnl\|Hg17\|chr1 (153452344-153452723)
	2-384, gnl\|Mm7\|chr3 (88093676-88093316)