Non-Coding RNA Search

Ss1.1-Pig1-81E16.5

Sequence:


               
               TTCCTGCCTGCACACTGCAGCCCTTTCTATACAGACCAGAGGATTATGCAGTTAACAATC
GAGCCCAACAGGAGCTTGTCAGCTGTTGAAGGAAGGAAAGGCATTCTTGGCAGAGGGAAG
AGCATGGCAAGAGGGAGGAGGCTCCCTGAGTACAGAGGTTAAGAGCGCAGGTTACTGGAG
CTCATGGTGTTGTCACTTATTTGCTGTGTGATGATGAGTGAGTTGCTTCCTCTCTTTGGG
CCTTAGTTTCATCCTCTGTGTAACGGGCAATAGTGTTGGCCCTTTGGCTGTACAGAGTCA
ACTTCTGGGGGCTTGTGAAAAGGCATCTTGTGCAGGTTAGGCCTCCCACCACAACTTCAC
ACCTGCCTACAAGGCTTTTCTGCCAATTTTGCCTCTCTGGAAAACTCTTATTCATCTCTC
AAAACCCCAGCTATTACCTCCTTGCAGCTTTACCTAGGGTTCTCCCACTACTCTCAGCCA
GTCCTGTACTTCCGACCCTAGGGCAGGGGTGGTGTCTGTGTCTGGTTCTGTCTCCACTGA
CCTGGAGGCTCCTTGGGGGCTGGGCTGGGGTGGGCACAGAGAGGACTCTGGGAGCAATTG
CTGAATGAATAAAGAAGTTTAGTGGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTGCCTGCACACTGCAGCCCTTTCTATACAGACCAGAGGATTATGCAGTTAACAATC
GAGCCCAACAGGAGCTTGTCAGCTGTTGAAGGAAGGAAAGGCATTCTTGGCAGAGGGAAG
AGCATGGCAAGAGGGAGGAGGCTCCCTGAGTACAGAGGTTAAGAGCGCAGGTTACTGGAG
CTCATGGTGTTGTCACTTATTTGCTGTGTGATGATGAGTGAGTTGCTTCCTCTCTTTGGG
CCTTAGTTTCATCCTCTGTGTAACGGGCAATAGTGTTGGCCCTTTGGCTGTACAGAGTCA
ACTTCTGGGGGCTTGTGAAAAGGCATCTTGTGCAGGTTAGGCCTCCCACCACAACTTCAC
ACCTGCCTACAAGGCTTTTCTGCCAATTTTGCCTCTCTGGAAAACTCTTATTCATCTCTC
AAAACCCCAGCTATTACCTCCTTGCAGCTTTACCTAGGGTTCTCCCACTACTCTCAGCCA
GTCCTGTACTTCCGACCCTAGGGCAGGGGTGGTGTCTGTGTCTGGTTCTGTCTCCACTGA
CCTGGAGGCTCCTTGGGGGCTGGGCTGGGGTGGGCACAGAGAGGACTCTGGGAGCAATTG
CTGAATGAATAAAGAAGTTTAGTGGAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               200-439, - strand, RNAz p=0.924882
               

               
               477-628, - strand, RNAz p=0.990691

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-439, - strand, RNAz p=0.924882
               

               
               477-628, - strand, RNAz p=0.990691

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               263-374, - strand, RNAmicro p=0.998713

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               263-374, - strand, RNAmicro p=0.998713

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               8-628, gnl|bosTau2|chr7 (4577991-4578606)
               

               
               8-628, gnl|canFam2|chr20 (48070418-48069443)
               

               
               8-628, gnl|echTel1|scaffold_26984 (5417-6387)
               

               
               8-628, gnl|hg17|chr19 (17796180-17797149)
               

               
               8-628, gnl|Hg17|chr19 (17797217-17796592)
               

               
               8-628, gnl|loxAfr1|scaffold_71014 (5807-4867)
               

               
               8-628, gnl|panTro1|chr20 (18788070-18789040)
               

               
               8-628, gnl|rheMac2|chr19 (17391705-17392660)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-628, gnl|bosTau2|chr7 (4577991-4578606)
               

               
               8-628, gnl|canFam2|chr20 (48070418-48069443)
               

               
               8-628, gnl|echTel1|scaffold_26984 (5417-6387)
               

               
               8-628, gnl|hg17|chr19 (17796180-17797149)
               

               
               8-628, gnl|Hg17|chr19 (17797217-17796592)
               

               
               8-628, gnl|loxAfr1|scaffold_71014 (5807-4867)
               

               
               8-628, gnl|panTro1|chr20 (18788070-18789040)
               

               
               8-628, gnl|rheMac2|chr19 (17391705-17392660)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cly (0.241284)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.241284)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	200-439, - strand, RNAz p=0.924882
	477-628, - strand, RNAz p=0.990691

	8-628, gnl\|bosTau2\|chr7 (4577991-4578606)
	8-628, gnl\|canFam2\|chr20 (48070418-48069443)
	8-628, gnl\|echTel1\|scaffold_26984 (5417-6387)
	8-628, gnl\|hg17\|chr19 (17796180-17797149)
	8-628, gnl\|Hg17\|chr19 (17797217-17796592)
	8-628, gnl\|loxAfr1\|scaffold_71014 (5807-4867)
	8-628, gnl\|panTro1\|chr20 (18788070-18789040)
	8-628, gnl\|rheMac2\|chr19 (17391705-17392660)

	cly (0.241284)
	nms (0.213858)
	col (0.195008)
	fbs (0.175346)
	cki (0.165235)
	cag (0.151194)
	ebs (0.118301)
	nbm (0.0993246)