Ss1.1-Pig1-81G19.5
|
CCTCGCCGCTGCCATGGCGGCAGCTCCGCCGCTCTCCAAGGCCGAGTATCTGAAGCGTTA
CTTGTCCGGGGCAGATGCCGGTGTCGACGGGGGCCCTGAATCCGGCCGCAAGCGTCGCAA
AAAGCGGCCGAAGACTGGCGGGGCTGGCGGCAAGGGTATGCGGATTGTGGATGATGACGT
GAGCTGGTCATCTATCTCCACCACTAAACTGGAAAAGGAGGAAGAGGAAGATGATGGAGA
TTTGCCTGTGGTGGCTGAGTTTGTGGATGAGCGGCCAGAAGAGGTAAAGCAAATGGAAGC
GTTTCGTTCCAGTGCCAAATGGAAGCTTCTGGGAGGCCACAATGAAGATCTGCCCTCACA
CAGACATTTCCGTCGTGACACCCCAGATGCATCACCTCCTAGGAGGGCTCGTCATGACAC
CCCAGATTCATCACCTCCGGGGAAGGTCCGCCATGACACTCCAGATTCATCGCCTCCTAG
AAGGGCTCGTCATGATTCCCCAGATCCACCACCTCCTAGGAAGGTCCGTCATGACACACC
AGATCCATCACCTCCTAGGAGAGCCCGTCATGATACACCAGATCCATCACCTCCTAGGAG
AGCCCGTCATGATACACCAGATCCATCACCTCCTAGGAGAGCCCACCGCAGTTCCTCAGA
TATCTCTCCTCCCAGAAGGGCCCGTAATCGCTCCCCTGACACAGTTCAACCTAGAAGGAC
TCTTGATTCCATGGACACATCGCAGCTGAGGAGGGCCCGTCATGATTCCCCTGACTTGGC
TTCTAGTGTCCCTCATTCACTGCCCAGAACCAAAAGCAGTACAGCCCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCTCGCCGCTGCCATGGCGGCAGCTCCGCCGCTCTCCAAGGCCGAGTATCTGAAGCGTTA
CTTGTCCGGGGCAGATGCCGGTGTCGACGGGGGCCCTGAATCCGGCCGCAAGCGTCGCAA
AAAGCGGCCGAAGACTGGCGGGGCTGGCGGCAAGGGTATGCGGATTGTGGATGATGACGT
GAGCTGGTCATCTATCTCCACCACTAAACTGGAAAAGGAGGAAGAGGAAGATGATGGAGA
TTTGCCTGTGGTGGCTGAGTTTGTGGATGAGCGGCCAGAAGAGGTAAAGCAAATGGAAGC
GTTTCGTTCCAGTGCCAAATGGAAGCTTCTGGGAGGCCACAATGAAGATCTGCCCTCACA
CAGACATTTCCGTCGTGACACCCCAGATGCATCACCTCCTAGGAGGGCTCGTCATGACAC
CCCAGATTCATCACCTCCGGGGAAGGTCCGCCATGACACTCCAGATTCATCGCCTCCTAG
AAGGGCTCGTCATGATTCCCCAGATCCACCACCTCCTAGGAAGGTCCGTCATGACACACC
AGATCCATCACCTCCTAGGAGAGCCCGTCATGATACACCAGATCCATCACCTCCTAGGAG
AGCCCGTCATGATACACCAGATCCATCACCTCCTAGGAGAGCCCACCGCAGTTCCTCAGA
TATCTCTCCTCCCAGAAGGGCCCGTAATCGCTCCCCTGACACAGTTCAACCTAGAAGGAC
TCTTGATTCCATGGACACATCGCAGCTGAGGAGGGCCCGTCATGATTCCCCTGACTTGGC
TTCTAGTGTCCCTCATTCACTGCCCAGAACCAAAAGCAGTACAGCCCC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
569-742, - strand, RNAmicro p=0.999999 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
569-742, - strand, RNAmicro p=0.999999 |
|
346-742, BP159380 full-length enriched swine cDNA library, adult thymus Sus
(dbj|BP159380.1|), blast E-value=0, identity=100% |
|
371-639, 1367316 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN534365.1|),
blast E-value=5e-19, identity=80.33% |
|
371-639, LB00478.CR.1_C20 GC_BGC-04 Bos taurus cDNA clone IMAGE
(gb|DT847531.1|), blast E-value=5e-19, identity=80.33% |
|
371-639, 1476649 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT894068.1|),
blast E-value=5e-19, identity=80.33% |
|
371-639, LB02715.CR_M05 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV890027.1|),
blast E-value=5e-19, identity=80.33% |
|
409-639, 000514BPPA004432HT BPPA Bos taurus cDNA, mRNA sequence
(gb|DY177306.1|), blast E-value=0.000000000000002, identity=80.81% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
346-742, BP159380 full-length enriched swine cDNA library, adult thymus Sus
(dbj|BP159380.1|), blast E-value=0, identity=100% |
|
371-639, 1367316 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN534365.1|),
blast E-value=5e-19, identity=80.33% |
|
371-639, LB00478.CR.1_C20 GC_BGC-04 Bos taurus cDNA clone IMAGE
(gb|DT847531.1|), blast E-value=5e-19, identity=80.33% |
|
371-639, 1476649 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT894068.1|),
blast E-value=5e-19, identity=80.33% |
|
371-639, LB02715.CR_M05 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV890027.1|),
blast E-value=5e-19, identity=80.33% |
|
409-639, 000514BPPA004432HT BPPA Bos taurus cDNA, mRNA sequence
(gb|DY177306.1|), blast E-value=0.000000000000002, identity=80.81% |
|
4-156, gnl|bosTau2|chr15 (13280819-13280971) |
|
4-156, gnl|canFam2|chr5 (19794889-19794731) |
|
4-156, gnl|dasNov1|scaffold_48097 (2631-2473) |
|
4-156, gnl|echTel1|scaffold_305208 (42902-42744) |
|
4-156, gnl|hg17|chr11 (116148742-116148900) |
|
4-156, gnl|Hg17|chr11 (116148900-116148748) |
|
4-156, gnl|loxAfr1|scaffold_12853 (28857-28699) |
|
4-156, gnl|mm7|chr9 (46241308-46241150) |
|
4-156, gnl|Mm7|chr9 (46241141-46241300) |
|
4-156, gnl|monDom2|scaffold_2 (122588409-122588251) |
|
4-156, gnl|oryCun1|scaffold_142805 (6688-6530) |
|
4-156, gnl|panTro1|chr9 (118148490-118148648) |
|
4-156, gnl|rheMac2|chr14 (115169910-115170068) |
|
4-156, gnl|rn3|chr8 (49279048-49278890) |
|
4-156, gnl|xenTro1|scaffold_18 (1547443-1547311) |
| |
|
334-775, gnl|bosTau2|chr15 (13287923-13288367) |
|
334-775, gnl|Hg17|chr11 (116139194-116138765) |
|
334-775, gnl|Mm7|chr9 (46245788-46246292) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
4-156, gnl|bosTau2|chr15 (13280819-13280971) |
|
4-156, gnl|canFam2|chr5 (19794889-19794731) |
|
4-156, gnl|dasNov1|scaffold_48097 (2631-2473) |
|
4-156, gnl|echTel1|scaffold_305208 (42902-42744) |
|
4-156, gnl|hg17|chr11 (116148742-116148900) |
|
4-156, gnl|Hg17|chr11 (116148900-116148748) |
|
4-156, gnl|loxAfr1|scaffold_12853 (28857-28699) |
|
4-156, gnl|mm7|chr9 (46241308-46241150) |
|
4-156, gnl|Mm7|chr9 (46241141-46241300) |
|
4-156, gnl|monDom2|scaffold_2 (122588409-122588251) |
|
4-156, gnl|oryCun1|scaffold_142805 (6688-6530) |
|
4-156, gnl|panTro1|chr9 (118148490-118148648) |
|
4-156, gnl|rheMac2|chr14 (115169910-115170068) |
|
4-156, gnl|rn3|chr8 (49279048-49278890) |
|
4-156, gnl|xenTro1|scaffold_18 (1547443-1547311) |
| |
|
334-775, gnl|bosTau2|chr15 (13287923-13288367) |
|
334-775, gnl|Hg17|chr11 (116139194-116138765) |
|
334-775, gnl|Mm7|chr9 (46245788-46246292) |
