Non-Coding RNA Search

Ss1.1-Pig1-81J11.5.5

Sequence:


               
               CTCTGGCAACACCAGCTCCTTGGCCTGCTCTCCGTCTATACCCGGCCTAGCTGTGGACCT
GAGGCCTTGGGCCATCTCCTGAGCCGGGCCCGAAGCCCTGAAGAGTTGAGTCTGGCCACT
CAATTATATGCAGGGCTGGTGGTCAGTCTCTCTGGCCTCCTGCCCCTGGCCTTCCGAAGC
TGCCTGGCCAGGGTACACGCAGGGACTTTGCAACCTCCCTTCACAGCCCGGTTCCTGCGC
AACTTGGCCCTGCTAGTGGGGTGGGAACAGCAGGGTGGTGAAGGTCCTGCAGCGCTGGGG
GCCCGGTTTGGGGAGTCTGCTTCGGCTCATCTGTCTGACCTGGCTCCTCTCCTGCTACAT
CCTGAGGAGGAAGTAGCCGAAGCCGCTGCCTCCCTCTTGGCCATCTGTCCTTTTCCTCCG
GAAGCCCTGTCCCCTTCCCAACTCCTGGGACTGGTGAGAGCTGGAGTGCATCGCTTCTTT
GCCTCTCTGAGGCTGCATGGCCCCCCAGGCGTGGCTTCGGCCTCCCAGCTTCTTACCCGC
CTCTCCCAGACCTCCCCCGCTGGGCTCAAGGCTGTCTTGCAGCTGCTAGTGGAGGGAGCC
TTACATCGGGGCAACACAGAACTGTTTGGCGGGGAAGTGGATAGGGACAATGAGACTCTC
TCAGTCATTTCAGCTCCTTTGGCTTCTGCCTCCCTGTTGGACACAAACCGGCGACACACC
GCAGCTGTGCCAGGTCCTGGAGGGATTTGGTCTGTTTTCCACGCTGGAGTCATCGGCAGT
GGCCTAAAGCCCCCCAAGTCTGTCCAGTCACGCAATCAGCAGGAAGTGATCTATAACACC
CAGAGCCTCCTCAGCCTCCTTGTGCACTGCTGCACTGCCCCAGGGGGCACTGAATGTGTG
GGCTGCTGGGGGGCTCCCACCCTGAGCCCAGAGGCAGCCAAAGCTGTGGCAGTGACCTTG
GTGGAGAGTGTGTGTCCTGATGCGGCGGGTGCTGAGCTAGCCTGGCCTCCTGAGGAGCAT
GCGCGGGCCACTGTGGAGCGGGATCTCCGCATCGGCCGGCGCTTCCGGGAACAGCCTCTG
CTCTTTGAGTTGCTAAAGTTGGTAGCAGCTGCTCCCCCAGCCCTGTGCTACTGCTCCGTG
CTGCTGCGGGGGCTGCTGGCCGCCCTCTTGGGCCATTGGGAAGCCTCTCGCCACCCTGAT
ACAGCCCAGTCCCCCTGGCACCTGGAGGCATCCTGCACCCTGGTGGCTGTCATGGCTGAG
GGAAGCCTCCTGCCACCAGCTCTGGGGAACATGCACGAGGTATTTAGCCAACTGGCACCT
TTCGAAGTGCGACTGCTGCTGCTCAGTGTCTGGGGCTTTCTTCGGGAGCATGGGCCCTTG
CCCCAGAAGTTCATCTTCCAGTCAGAGCGTGGCCGCTTCATCCGGGACTTCTCCAGGGAG
GGTGGGGGTGAGGGTGGACCCCATCTGGCTGTGCTGCACAGTGTCCTTCACCGCAACATT
GACCGCCTGGGCCTTTTCTCTGGCCGTTTCCAGGCACCATCGCCACCCGCTCTCCTTCGG
CAAGGGACATAACCTTTTCAAGCTCCAGAAGTCGAGAGATGTTGAGCCATGAGAGACGGG
GGGCTAAGGTGCTGCAGAAAGGTAGAAGGTCCTCTTCTTCTAAGGCCTTGGCCTAAAAGA
GCGCTGTCACTTTTTTCCTCCCCCACCCCACCTTTTTTTCTAAATAAAATTTGCCGACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGGCAACACCAGCTCCTTGGCCTGCTCTCCGTCTATACCCGGCCTAGCTGTGGACCT
GAGGCCTTGGGCCATCTCCTGAGCCGGGCCCGAAGCCCTGAAGAGTTGAGTCTGGCCACT
CAATTATATGCAGGGCTGGTGGTCAGTCTCTCTGGCCTCCTGCCCCTGGCCTTCCGAAGC
TGCCTGGCCAGGGTACACGCAGGGACTTTGCAACCTCCCTTCACAGCCCGGTTCCTGCGC
AACTTGGCCCTGCTAGTGGGGTGGGAACAGCAGGGTGGTGAAGGTCCTGCAGCGCTGGGG
GCCCGGTTTGGGGAGTCTGCTTCGGCTCATCTGTCTGACCTGGCTCCTCTCCTGCTACAT
CCTGAGGAGGAAGTAGCCGAAGCCGCTGCCTCCCTCTTGGCCATCTGTCCTTTTCCTCCG
GAAGCCCTGTCCCCTTCCCAACTCCTGGGACTGGTGAGAGCTGGAGTGCATCGCTTCTTT
GCCTCTCTGAGGCTGCATGGCCCCCCAGGCGTGGCTTCGGCCTCCCAGCTTCTTACCCGC
CTCTCCCAGACCTCCCCCGCTGGGCTCAAGGCTGTCTTGCAGCTGCTAGTGGAGGGAGCC
TTACATCGGGGCAACACAGAACTGTTTGGCGGGGAAGTGGATAGGGACAATGAGACTCTC
TCAGTCATTTCAGCTCCTTTGGCTTCTGCCTCCCTGTTGGACACAAACCGGCGACACACC
GCAGCTGTGCCAGGTCCTGGAGGGATTTGGTCTGTTTTCCACGCTGGAGTCATCGGCAGT
GGCCTAAAGCCCCCCAAGTCTGTCCAGTCACGCAATCAGCAGGAAGTGATCTATAACACC
CAGAGCCTCCTCAGCCTCCTTGTGCACTGCTGCACTGCCCCAGGGGGCACTGAATGTGTG
GGCTGCTGGGGGGCTCCCACCCTGAGCCCAGAGGCAGCCAAAGCTGTGGCAGTGACCTTG
GTGGAGAGTGTGTGTCCTGATGCGGCGGGTGCTGAGCTAGCCTGGCCTCCTGAGGAGCAT
GCGCGGGCCACTGTGGAGCGGGATCTCCGCATCGGCCGGCGCTTCCGGGAACAGCCTCTG
CTCTTTGAGTTGCTAAAGTTGGTAGCAGCTGCTCCCCCAGCCCTGTGCTACTGCTCCGTG
CTGCTGCGGGGGCTGCTGGCCGCCCTCTTGGGCCATTGGGAAGCCTCTCGCCACCCTGAT
ACAGCCCAGTCCCCCTGGCACCTGGAGGCATCCTGCACCCTGGTGGCTGTCATGGCTGAG
GGAAGCCTCCTGCCACCAGCTCTGGGGAACATGCACGAGGTATTTAGCCAACTGGCACCT
TTCGAAGTGCGACTGCTGCTGCTCAGTGTCTGGGGCTTTCTTCGGGAGCATGGGCCCTTG
CCCCAGAAGTTCATCTTCCAGTCAGAGCGTGGCCGCTTCATCCGGGACTTCTCCAGGGAG
GGTGGGGGTGAGGGTGGACCCCATCTGGCTGTGCTGCACAGTGTCCTTCACCGCAACATT
GACCGCCTGGGCCTTTTCTCTGGCCGTTTCCAGGCACCATCGCCACCCGCTCTCCTTCGG
CAAGGGACATAACCTTTTCAAGCTCCAGAAGTCGAGAGATGTTGAGCCATGAGAGACGGG
GGGCTAAGGTGCTGCAGAAAGGTAGAAGGTCCTCTTCTTCTAAGGCCTTGGCCTAAAAGA
GCGCTGTCACTTTTTTCCTCCCCCACCCCACCTTTTTTTCTAAATAAAATTTGCCGACTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61847412|ref|XP_591954.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61847412|ref|XP_591954.1|

Predicted RNA structure(s): 7 entry(ies)

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Predicted RNA structure(s): 7 entry(ies)

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               40-239, - strand, RNAz p=0.872548
               

               
               280-399, - strand, RNAz p=0.861118
               

               
               440-559, - strand, RNAz p=0.833987
               

               
               680-799, - strand, RNAz p=0.534212
               

               
               840-959, - strand, RNAz p=0.706816
               

               
               1080-1319, - strand, RNAz p=0.760995
               

               
               1440-1559, + strand, RNAz p=0.780368

Predicted RNA structure(s): 7 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-239, - strand, RNAz p=0.872548
               

               
               280-399, - strand, RNAz p=0.861118
               

               
               440-559, - strand, RNAz p=0.833987
               

               
               680-799, - strand, RNAz p=0.534212
               

               
               840-959, - strand, RNAz p=0.706816
               

               
               1080-1319, - strand, RNAz p=0.760995
               

               
               1440-1559, + strand, RNAz p=0.780368

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1740, gnl|bosTau2|chr29 (32088303-32086577)
               

               
               1-1740, gnl|Hg17|chr11 (62172639-62170906)
               

               
               1-1740, gnl|Mm7|chr19 (8576326-8578042)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1740, gnl|bosTau2|chr29 (32088303-32086577)
               

               
               1-1740, gnl|Hg17|chr11 (62172639-62170906)
               

               
               1-1740, gnl|Mm7|chr19 (8576326-8578042)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               csp (0.161186)
               

               
               cag (0.151194)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	40-239, - strand, RNAz p=0.872548
	280-399, - strand, RNAz p=0.861118
	440-559, - strand, RNAz p=0.833987
	680-799, - strand, RNAz p=0.534212
	840-959, - strand, RNAz p=0.706816
	1080-1319, - strand, RNAz p=0.760995
	1440-1559, + strand, RNAz p=0.780368

	1-1740, gnl\|bosTau2\|chr29 (32088303-32086577)
	1-1740, gnl\|Hg17\|chr11 (62172639-62170906)
	1-1740, gnl\|Mm7\|chr19 (8576326-8578042)

	csp (0.161186)
	cag (0.151194)
	che (0.136314)
	eep (0.122564)
	jca (0.11396)