Non-Coding RNA Search

Ss1.1-Pig1-81K16.5

Sequence:


               
               TACACATCCGGAAGGTCCTCCTGGTCCTGCCCAAAACCACTCTGATTATCATGAGATACC
TCTTTGCCTTCCTCAATCATTTATCCCAGTTCAGTGAAGAGAACATGATGGACCCCTACA
ACCTCGCCATCTGCTTCGGGCCCTCGCTGATGTCGGTGCCTGAGGGCCACGACCAGGTGG
CGACACCCAGCCACGTGAACGAGCTGATCAAAACCATCCATTCCTCTGCTGGGCGTAGGG
CCCCCCTTGCTCCCCGGCCTGACCAGCTTGCATGTGCTCCTGGCTGCTGCAGGGCGGACA
GGGCCAAGGAGAACATCCACAGGCCTCGTCAGCAGGCCCAGGTCTCCGGCAGGCGGCCAT
AGCGCTAAGGACAGCTGTGCCCGTCTGTCCGCTCAGACCTTCCAGGCCGTCTGACCGCTA
AGACTTTGGCCAAAGCTTTCGTCACTTCATGCAACTTGGTTTTGTATTGTTTCTCGAGAG
GTGCCTTCTCTTTTCCAATTCTGACTCAAACGATTTCTGTGATGTCTTCCTTGGCCCTTG
TCTGTCCGAAGATCCAAAGTCTCGTGTGTCTTCTACCAGGTTCATGTTACCCCCGATGGT
TTATTTAGATCTCACGTGTCTGTTTCTCCCTCGCCCTGCATTCGCTCCCCTGGAGGAAAA
GAGACCAGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACACATCCGGAAGGTCCTCCTGGTCCTGCCCAAAACCACTCTGATTATCATGAGATACC
TCTTTGCCTTCCTCAATCATTTATCCCAGTTCAGTGAAGAGAACATGATGGACCCCTACA
ACCTCGCCATCTGCTTCGGGCCCTCGCTGATGTCGGTGCCTGAGGGCCACGACCAGGTGG
CGACACCCAGCCACGTGAACGAGCTGATCAAAACCATCCATTCCTCTGCTGGGCGTAGGG
CCCCCCTTGCTCCCCGGCCTGACCAGCTTGCATGTGCTCCTGGCTGCTGCAGGGCGGACA
GGGCCAAGGAGAACATCCACAGGCCTCGTCAGCAGGCCCAGGTCTCCGGCAGGCGGCCAT
AGCGCTAAGGACAGCTGTGCCCGTCTGTCCGCTCAGACCTTCCAGGCCGTCTGACCGCTA
AGACTTTGGCCAAAGCTTTCGTCACTTCATGCAACTTGGTTTTGTATTGTTTCTCGAGAG
GTGCCTTCTCTTTTCCAATTCTGACTCAAACGATTTCTGTGATGTCTTCCTTGGCCCTTG
TCTGTCCGAAGATCCAAAGTCTCGTGTGTCTTCTACCAGGTTCATGTTACCCCCGATGGT
TTATTTAGATCTCACGTGTCTGTTTCTCCCTCGCCCTGCATTCGCTCCCCTGGAGGAAAA
GAGACCAGTGCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               180-667, gnl|bosTau2|chr16 (4212636-4213121)
               

               
               180-667, gnl|Hg17|chr1 (203016810-203017317)
               

               
               180-667, gnl|Mm7|chr1 (131200409-131199921)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               180-667, gnl|bosTau2|chr16 (4212636-4213121)
               

               
               180-667, gnl|Hg17|chr1 (203016810-203017317)
               

               
               180-667, gnl|Mm7|chr1 (131200409-131199921)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pla (0.133672)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	180-667, gnl\|bosTau2\|chr16 (4212636-4213121)
	180-667, gnl\|Hg17\|chr1 (203016810-203017317)
	180-667, gnl\|Mm7\|chr1 (131200409-131199921)