Non-Coding RNA Search

Ss1.1-Pig1-81K20.5

Sequence:


               
               ATACTTTATGAAAGTACCAATGCTATTGCTGGATGGAAGCGTCTTCCCACAGGAAGGCAC
CATTAGCCAACCGTTCCCATTCCCTCTGGCTGGATACGCATAATACAAACTGACTAGTTC
TCTCCAAGCTGTTGCTTAAAGCGTAACACTTTTTTGATCCAGTATACAGACTCTTTCAAC
TAACAAAAGTTCCTGTTAAGTATTAAAAGTAGTTGTGATTCATGAATCAAGGACAAACAT
ACCTTCTATTGTAAAAACTTGGACTAAATTCATGGGCCAGTTTTCACCCAGATATTTGGG
TAGCACAATTTATCACATAAAAAGCCCACTGATCCTTTGATTTTCTGATTCAGAAAACTG
AGACTGTTACGATACTGAGATGTGAAAGATTTCAAGTGACATTACAATGGTAAGCTTTGT
TCATAAAACCTACTAGTTGCCTATGAGGAGGTGTGAGTGGTGAATGAGAATTGTTTACTC
CCTCTGATGCGAATCCAGCCCCAGCCTGCGTCAACTCGAACAACTCCGAATTCACTGCAG
ATGTCAAGCGGCCTGCAGTTGATGACCATCCACTTTTTGCCAGACTTTAGTCAAATTCTG
AAAAAGAAGTATGATCATTGAAGCCTGAGCTCAACTTGCTAGAAAATCTTTTGTCAGAAC
TAATACATTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACTTTATGAAAGTACCAATGCTATTGCTGGATGGAAGCGTCTTCCCACAGGAAGGCAC
CATTAGCCAACCGTTCCCATTCCCTCTGGCTGGATACGCATAATACAAACTGACTAGTTC
TCTCCAAGCTGTTGCTTAAAGCGTAACACTTTTTTGATCCAGTATACAGACTCTTTCAAC
TAACAAAAGTTCCTGTTAAGTATTAAAAGTAGTTGTGATTCATGAATCAAGGACAAACAT
ACCTTCTATTGTAAAAACTTGGACTAAATTCATGGGCCAGTTTTCACCCAGATATTTGGG
TAGCACAATTTATCACATAAAAAGCCCACTGATCCTTTGATTTTCTGATTCAGAAAACTG
AGACTGTTACGATACTGAGATGTGAAAGATTTCAAGTGACATTACAATGGTAAGCTTTGT
TCATAAAACCTACTAGTTGCCTATGAGGAGGTGTGAGTGGTGAATGAGAATTGTTTACTC
CCTCTGATGCGAATCCAGCCCCAGCCTGCGTCAACTCGAACAACTCCGAATTCACTGCAG
ATGTCAAGCGGCCTGCAGTTGATGACCATCCACTTTTTGCCAGACTTTAGTCAAATTCTG
AAAAAGAAGTATGATCATTGAAGCCTGAGCTCAACTTGCTAGAAAATCTTTTGTCAGAAC
TAATACATTTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               19-110, + strand, RNAz p=0.587178

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-110, + strand, RNAz p=0.587178

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_016353, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_016353, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-672, gnl|bosTau2|chr27 (12708183-12707513)
               

               
               19-672, gnl|Hg17|chr8 (17122141-17122811)
               

               
               19-672, gnl|Mm7|chr8 (39274241-39274905)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-672, gnl|bosTau2|chr27 (12708183-12707513)
               

               
               19-672, gnl|Hg17|chr8 (17122141-17122811)
               

               
               19-672, gnl|Mm7|chr8 (39274241-39274905)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               spc (0.113366)

	19-672, gnl\|bosTau2\|chr27 (12708183-12707513)
	19-672, gnl\|Hg17\|chr8 (17122141-17122811)
	19-672, gnl\|Mm7\|chr8 (39274241-39274905)