Ss1.1-Pig1-81M16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGAAGGAGGTGCTCATGGAGAAGGAGAGCCTGGAGCGGCGCAAGGGGCCCCTGGAGGG CCACACGGAGCAGGACTACAACCGCTTCCACCCGCTGCCCCGCTTCGAGCCCAAGAACGG GCTCATCAACGGCGTGGCCCACAGGAACGGCTTCCGCAGCAAGCTGAAGGAGGTGGGCCC CGCGCAGCTCAAGACGGGCCGGCGGAGACTCTTTGCTCAGGAAAAGGAGGTGGCGAAGGA GGAGGAGGAGGACAAAGGCATCCTCAGCGACTTCCACAAGTGCATATACAAGGGAAGATC TGTTTCTTTAACGACTTTTTACCGAACAGCTAGAAATATCATGAACATGTGCTTCAGCAA GGAGCCGGCCCCCGCGGAGATCGAGCAAGAGTACTGGAGGCTTGTGGAGGAGAAGGACTG CCACGTGGCTGTGCACTGCGGCAAAGTGGACACCAACACGCACGGCAGCGGCTTCCCGGT GGGGAAATCAGAGCCCTTTTCAAGACACGGATGGAACCTCACCGTCCTCCCCAATAACAC AGGCTCCATCCTGCGTCACCTCGGTGCTGTGCCTGGAGTGACAATTCCCTGGCTGAACAT CGGCATGGTCTTTTCTACCTCATGCTGGTCTCGAGACCAAAACCACCTTCCCTACATCGA CTACTTACACACTGGTGCTGACTGCATTTGGTATTGCATTCCTGCTGAGGAGGAGAACAA GCTCGAGGACGTGGTGCACACCCTGCTCCAAGCCAACGGCACGCCGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGAAGGAGGTGCTCATGGAGAAGGAGAGCCTGGAGCGGCGCAAGGGGCCCCTGGAGGG CCACACGGAGCAGGACTACAACCGCTTCCACCCGCTGCCCCGCTTCGAGCCCAAGAACGG GCTCATCAACGGCGTGGCCCACAGGAACGGCTTCCGCAGCAAGCTGAAGGAGGTGGGCCC CGCGCAGCTCAAGACGGGCCGGCGGAGACTCTTTGCTCAGGAAAAGGAGGTGGCGAAGGA GGAGGAGGAGGACAAAGGCATCCTCAGCGACTTCCACAAGTGCATATACAAGGGAAGATC TGTTTCTTTAACGACTTTTTACCGAACAGCTAGAAATATCATGAACATGTGCTTCAGCAA GGAGCCGGCCCCCGCGGAGATCGAGCAAGAGTACTGGAGGCTTGTGGAGGAGAAGGACTG CCACGTGGCTGTGCACTGCGGCAAAGTGGACACCAACACGCACGGCAGCGGCTTCCCGGT GGGGAAATCAGAGCCCTTTTCAAGACACGGATGGAACCTCACCGTCCTCCCCAATAACAC AGGCTCCATCCTGCGTCACCTCGGTGCTGTGCCTGGAGTGACAATTCCCTGGCTGAACAT CGGCATGGTCTTTTCTACCTCATGCTGGTCTCGAGACCAAAACCACCTTCCCTACATCGA CTACTTACACACTGGTGCTGACTGCATTTGGTATTGCATTCCTGCTGAGGAGGAGAACAA GCTCGAGGACGTGGTGCACACCCTGCTCCAAGCCAACGGCACGCCGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-159, - strand, RNAz p=0.97385 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-159, - strand, RNAz p=0.97385 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-293, gnl|bosTau2|chr23 (36777808-36777516) | |
| 1-293, gnl|Hg17|chr6 (15609328-15609620) | |
| 1-293, gnl|Mm7|chr13 (44356039-44356331) | |
| 384-504, gnl|bosTau2|chr23 (36771971-36771851) | |
| 384-504, gnl|canFam2|chr35 (17734269-17734415) | |
| 384-504, gnl|danRer3|chr13 (25058510-25058657) | |
| 384-504, gnl|dasNov1|scaffold_5479 (44053-43906) | |
| 384-504, gnl|echTel1|scaffold_291393 (3908-3763) | |
| 384-504, gnl|fr1|chrUn (118407952-118407805) | |
| 384-504, gnl|galGal2|chr2 (61004641-61004778) | |
| 384-504, gnl|hg17|chr6 (15615322-15615469) | |
| 384-504, gnl|Hg17|chr6 (15615344-15615464) | |
| 384-504, gnl|mm7|chr13 (44359915-44360061) | |
| 384-504, gnl|Mm7|chr13 (44359936-44360056) | |
| 384-504, gnl|monDom2|scaffold_3 (104018758-104018897) | |
| 384-504, gnl|oryCun1|scaffold_176971 (34569-34423) | |
| 384-504, gnl|panTro1|chr5 (15979764-15979911) | |
| 384-504, gnl|rheMac2|chr4 (15469124-15469271) | |
| 384-504, gnl|tetNig1|chr13 (4887998-4887865) | |
| 384-504, gnl|xenTro1|scaffold_64 (1189605-1189465) | |
| 567-692, gnl|bosTau2|chr23 (36771066-36770941) | |
| 567-692, gnl|canFam2|chr35 (17735919-17736066) | |
| 567-692, gnl|danRer3|chr13 (25058938-25059084) | |
| 567-692, gnl|dasNov1|scaffold_5479 (43065-42916) | |
| 567-692, gnl|echTel1|scaffold_291393 (2833-2677) | |
| 567-692, gnl|fr1|chrUn (118407600-118407456) | |
| 567-692, gnl|galGal2|chr2 (61005765-61005915) | |
| 567-692, gnl|hg17|chr6 (15616521-15616674) | |
| 567-692, gnl|Hg17|chr6 (15616537-15616666) | |
| 567-692, gnl|loxAfr1|scaffold_36644 (15188-15339) | |
| 567-692, gnl|mm7|chr13 (44360747-44360885) | |
| 567-692, gnl|Mm7|chr13 (44360752-44360877) | |
| 567-692, gnl|monDom2|scaffold_3 (104020811-104020966) | |
| 567-692, gnl|oryCun1|scaffold_176971 (33144-32997) | |
| 567-692, gnl|panTro1|chr5 (15980961-15981114) | |
| 567-692, gnl|rheMac2|chr4 (15470625-15470779) | |
| 567-692, gnl|tetNig1|chr13 (4887621-4887496) | |
| 567-692, gnl|xenTro1|scaffold_64 (1187608-1187456) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-293, gnl|bosTau2|chr23 (36777808-36777516) | |
| 1-293, gnl|Hg17|chr6 (15609328-15609620) | |
| 1-293, gnl|Mm7|chr13 (44356039-44356331) | |
| 384-504, gnl|bosTau2|chr23 (36771971-36771851) | |
| 384-504, gnl|canFam2|chr35 (17734269-17734415) | |
| 384-504, gnl|danRer3|chr13 (25058510-25058657) | |
| 384-504, gnl|dasNov1|scaffold_5479 (44053-43906) | |
| 384-504, gnl|echTel1|scaffold_291393 (3908-3763) | |
| 384-504, gnl|fr1|chrUn (118407952-118407805) | |
| 384-504, gnl|galGal2|chr2 (61004641-61004778) | |
| 384-504, gnl|hg17|chr6 (15615322-15615469) | |
| 384-504, gnl|Hg17|chr6 (15615344-15615464) | |
| 384-504, gnl|mm7|chr13 (44359915-44360061) | |
| 384-504, gnl|Mm7|chr13 (44359936-44360056) | |
| 384-504, gnl|monDom2|scaffold_3 (104018758-104018897) | |
| 384-504, gnl|oryCun1|scaffold_176971 (34569-34423) | |
| 384-504, gnl|panTro1|chr5 (15979764-15979911) | |
| 384-504, gnl|rheMac2|chr4 (15469124-15469271) | |
| 384-504, gnl|tetNig1|chr13 (4887998-4887865) | |
| 384-504, gnl|xenTro1|scaffold_64 (1189605-1189465) | |
| 567-692, gnl|bosTau2|chr23 (36771066-36770941) | |
| 567-692, gnl|canFam2|chr35 (17735919-17736066) | |
| 567-692, gnl|danRer3|chr13 (25058938-25059084) | |
| 567-692, gnl|dasNov1|scaffold_5479 (43065-42916) | |
| 567-692, gnl|echTel1|scaffold_291393 (2833-2677) | |
| 567-692, gnl|fr1|chrUn (118407600-118407456) | |
| 567-692, gnl|galGal2|chr2 (61005765-61005915) | |
| 567-692, gnl|hg17|chr6 (15616521-15616674) | |
| 567-692, gnl|Hg17|chr6 (15616537-15616666) | |
| 567-692, gnl|loxAfr1|scaffold_36644 (15188-15339) | |
| 567-692, gnl|mm7|chr13 (44360747-44360885) | |
| 567-692, gnl|Mm7|chr13 (44360752-44360877) | |
| 567-692, gnl|monDom2|scaffold_3 (104020811-104020966) | |
| 567-692, gnl|oryCun1|scaffold_176971 (33144-32997) | |
| 567-692, gnl|panTro1|chr5 (15980961-15981114) | |
| 567-692, gnl|rheMac2|chr4 (15470625-15470779) | |
| 567-692, gnl|tetNig1|chr13 (4887621-4887496) | |
| 567-692, gnl|xenTro1|scaffold_64 (1187608-1187456) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |