Non-Coding RNA Search

Ss1.1-Pig1-82B02.5

Sequence:


               
               GAGTACAGAAGT------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------GAAGAAGCAGCTTGAAGGGACATGGAGACAGTGGCC
AGAATGGGGACCCTGGAGCAGTGTCTTCTGCAGAGCTGGATAGTGTGAGGTTGAGACCTG
GGAAGGCCAGGCAAAAGACCCCTGTCAACCACTCAGGGACCCTGTGAAAACCAGAGAACG
CACACACTCTAACTGGGTGACCAAAGTGAGCTTAATAAAGGGAATATTTACAAAGTGGGG
GCAGAGCCTCTTGAAAGAGGGCAGGGTCCTGGGCTGGCACTGTGGGTGCCAGTCCCTCCC
CTGGTGTGGAGTGGTTGGCCGGGAGCATCCTCAGCAGAGAGAGAGGTGGGGGAACCTGAA
AGAGCTGTGACCTTTACTGGAAGGATGCAGCCAGCCTGCGGGACCCTGTAGGGAAAGGAC
TTCCTGACCTCACTGTCTTGCCTGCCTGAATCCTGCTGAGACTGAAGCCACCGGAAGTCA
GAGTAGGGAGCTCTTGATGGGGGTCCCCCTGGGAGTTCTTCCAGGGAAGAGGAGAGAGGA
GGGGGAATCTGGAGGGGCACAGGAAGAACATGTGGATCAACTGCCTGCCTTTCTGCTGCT
TGGTCTCCCAACTGGCACCCCCTTTTCCAGAGCTTCTGGTGTTGGTTTAATGCGATTGGT
AAGGAGTTATTTTTGAAGCTAGTGTGCTGAGGTATTGTCCCCGTATTCGCTTTATTATTA
GTTACTGATGAGCCTGGGACTAGATTAGCACAGTTAATCCTGAGGACAACGCTGAGGCAG
CCAGTGCAAGCTCAGGGAGCTCAGCAGGCTCAGAGAGGTTGAGTAACTCTTGAGGCCACA
CAGCAGGTGGCAGAGGTGGGATTCTGGTCTTTCCCAGGATCCCTTAACCAGTGGATTCGG
GCTTCCTTTGTTTGGGGTGGTGGGCTTCTAGTCAGTCAGCAAGTAGCTCAAACTGACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTACAGAAGT------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------GAAGAAGCAGCTTGAAGGGACATGGAGACAGTGGCC
AGAATGGGGACCCTGGAGCAGTGTCTTCTGCAGAGCTGGATAGTGTGAGGTTGAGACCTG
GGAAGGCCAGGCAAAAGACCCCTGTCAACCACTCAGGGACCCTGTGAAAACCAGAGAACG
CACACACTCTAACTGGGTGACCAAAGTGAGCTTAATAAAGGGAATATTTACAAAGTGGGG
GCAGAGCCTCTTGAAAGAGGGCAGGGTCCTGGGCTGGCACTGTGGGTGCCAGTCCCTCCC
CTGGTGTGGAGTGGTTGGCCGGGAGCATCCTCAGCAGAGAGAGAGGTGGGGGAACCTGAA
AGAGCTGTGACCTTTACTGGAAGGATGCAGCCAGCCTGCGGGACCCTGTAGGGAAAGGAC
TTCCTGACCTCACTGTCTTGCCTGCCTGAATCCTGCTGAGACTGAAGCCACCGGAAGTCA
GAGTAGGGAGCTCTTGATGGGGGTCCCCCTGGGAGTTCTTCCAGGGAAGAGGAGAGAGGA
GGGGGAATCTGGAGGGGCACAGGAAGAACATGTGGATCAACTGCCTGCCTTTCTGCTGCT
TGGTCTCCCAACTGGCACCCCCTTTTCCAGAGCTTCTGGTGTTGGTTTAATGCGATTGGT
AAGGAGTTATTTTTGAAGCTAGTGTGCTGAGGTATTGTCCCCGTATTCGCTTTATTATTA
GTTACTGATGAGCCTGGGACTAGATTAGCACAGTTAATCCTGAGGACAACGCTGAGGCAG
CCAGTGCAAGCTCAGGGAGCTCAGCAGGCTCAGAGAGGTTGAGTAACTCTTGAGGCCACA
CAGCAGGTGGCAGAGGTGGGATTCTGGTCTTTCCCAGGATCCCTTAACCAGTGGATTCGG
GCTTCCTTTGTTTGGGGTGGTGGGCTTCTAGTCAGTCAGCAAGTAGCTCAAACTGACTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               434-658, - strand, RNAz p=0.999888

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               434-658, - strand, RNAz p=0.999888

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               194-944, gnl|bosTau2|chr18 (18254790-18255563)
               

               
               194-944, gnl|Hg17|chr16 (49226480-49227268)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               194-944, gnl|bosTau2|chr18 (18254790-18255563)
               

               
               194-944, gnl|Hg17|chr16 (49226480-49227268)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	194-944, gnl\|bosTau2\|chr18 (18254790-18255563)
	194-944, gnl\|Hg17\|chr16 (49226480-49227268)