Non-Coding RNA Search

Ss1.1-Pig1-82D23.5

Sequence:


               
               AGGCCCCGCCCGTCCAAGCACATGGCCTCCCCTCTTGGGACAGTCCATCGTCCCACTCCC
ATGTGTCTGGGCACCTGCCCCGGGCTGAGGCCAGGCTGCTGCAGGGGCCTCTTGAGCCCC
CACCCACCGCAGCGTAACCCAGGTTGAGTACAGCCCAGGCACAGAGCCGCAGGCTGGAGC
CGTGGAGTTGGTTTTAAGAGTCAGATCTAACCGTGTTCGTAACTGGTCCCTGGAGGTGTG
CAGGAGTGCCCGCTTGCCTTTTCTAGACCCACAGCTTGTCTTAGCCATTTGTGGTTTCCA
TGTCACTCTTCACAGAAACAGCACAGCCCAGCATCCTCAATATTTGCCCTCTTCCAGCCG
CCTCATGTCAGCGCTGCAGCCCCCTGCGGCCCGGGCACGCCCTTTCCGAGGGCAGTGGGG
GGCAGTCTCATGCAGCCCCCCTGCTCTGTGACTGTCTTAGGTGATGCGTAGCCCCTCCAC
CTTCCCACCCAACAACTTCCTCTCCCTGTCCTGCTGCAGGGTCCGGAGTCTGGGACCTAC
TTTGTTTCTTTGTTATTTAAGACCTTGTTTAGAGAAAATAAATATCTCCCAACCTTTAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCCCCGCCCGTCCAAGCACATGGCCTCCCCTCTTGGGACAGTCCATCGTCCCACTCCC
ATGTGTCTGGGCACCTGCCCCGGGCTGAGGCCAGGCTGCTGCAGGGGCCTCTTGAGCCCC
CACCCACCGCAGCGTAACCCAGGTTGAGTACAGCCCAGGCACAGAGCCGCAGGCTGGAGC
CGTGGAGTTGGTTTTAAGAGTCAGATCTAACCGTGTTCGTAACTGGTCCCTGGAGGTGTG
CAGGAGTGCCCGCTTGCCTTTTCTAGACCCACAGCTTGTCTTAGCCATTTGTGGTTTCCA
TGTCACTCTTCACAGAAACAGCACAGCCCAGCATCCTCAATATTTGCCCTCTTCCAGCCG
CCTCATGTCAGCGCTGCAGCCCCCTGCGGCCCGGGCACGCCCTTTCCGAGGGCAGTGGGG
GGCAGTCTCATGCAGCCCCCCTGCTCTGTGACTGTCTTAGGTGATGCGTAGCCCCTCCAC
CTTCCCACCCAACAACTTCCTCTCCCTGTCCTGCTGCAGGGTCCGGAGTCTGGGACCTAC
TTTGTTTCTTTGTTATTTAAGACCTTGTTTAGAGAAAATAAATATCTCCCAACCTTTAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-238, - strand, RNAz p=0.992336
               

               
               122-221, - strand, RNAz p=0.941586
               

               
               455-598, - strand, RNAz p=0.998255
               

               
               475-598, - strand, RNAz p=0.901184

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-238, - strand, RNAz p=0.992336
               

               
               122-221, - strand, RNAz p=0.941586
               

               
               455-598, - strand, RNAz p=0.998255
               

               
               475-598, - strand, RNAz p=0.901184

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               71-169, - strand, RNAmicro p=0.994439

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               71-169, - strand, RNAmicro p=0.994439

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-598, gnl|bosTau2|chr15 (34137461-34138059)
               

               
               1-598, gnl|canFam2|chr21 (27046374-27045717)
               

               
               1-598, gnl|dasNov1|scaffold_5797 (55382-56033)
               

               
               1-598, gnl|echTel1|scaffold_156926 (4088-3465)
               

               
               1-598, gnl|hg17|chr11 (73642540-73643196)
               

               
               1-598, gnl|Hg17|chr11 (73642800-73643396)
               

               
               1-598, gnl|mm7|chr7 (96373793-96373167)
               

               
               1-598, gnl|Mm7|chr7 (96373560-96372979)
               

               
               1-598, gnl|monDom2|scaffold_74 (3191730-3190900)
               

               
               1-598, gnl|oryCun1|scaffold_197679 (9430-10070)
               

               
               1-598, gnl|panTro1|chr9 (74926466-74927107)
               

               
               1-598, gnl|rheMac2|chr14 (72441498-72442151)
               

               
               1-598, gnl|rn3|chr1 (157805242-157804617)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-598, gnl|bosTau2|chr15 (34137461-34138059)
               

               
               1-598, gnl|canFam2|chr21 (27046374-27045717)
               

               
               1-598, gnl|dasNov1|scaffold_5797 (55382-56033)
               

               
               1-598, gnl|echTel1|scaffold_156926 (4088-3465)
               

               
               1-598, gnl|hg17|chr11 (73642540-73643196)
               

               
               1-598, gnl|Hg17|chr11 (73642800-73643396)
               

               
               1-598, gnl|mm7|chr7 (96373793-96373167)
               

               
               1-598, gnl|Mm7|chr7 (96373560-96372979)
               

               
               1-598, gnl|monDom2|scaffold_74 (3191730-3190900)
               

               
               1-598, gnl|oryCun1|scaffold_197679 (9430-10070)
               

               
               1-598, gnl|panTro1|chr9 (74926466-74927107)
               

               
               1-598, gnl|rheMac2|chr14 (72441498-72442151)
               

               
               1-598, gnl|rn3|chr1 (157805242-157804617)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fhi (0.339155)
               

               
               ton (0.1755)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               ton (0.1755)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)

	1-238, - strand, RNAz p=0.992336
	122-221, - strand, RNAz p=0.941586
	455-598, - strand, RNAz p=0.998255
	475-598, - strand, RNAz p=0.901184

	1-598, gnl\|bosTau2\|chr15 (34137461-34138059)
	1-598, gnl\|canFam2\|chr21 (27046374-27045717)
	1-598, gnl\|dasNov1\|scaffold_5797 (55382-56033)
	1-598, gnl\|echTel1\|scaffold_156926 (4088-3465)
	1-598, gnl\|hg17\|chr11 (73642540-73643196)
	1-598, gnl\|Hg17\|chr11 (73642800-73643396)
	1-598, gnl\|mm7\|chr7 (96373793-96373167)
	1-598, gnl\|Mm7\|chr7 (96373560-96372979)
	1-598, gnl\|monDom2\|scaffold_74 (3191730-3190900)
	1-598, gnl\|oryCun1\|scaffold_197679 (9430-10070)
	1-598, gnl\|panTro1\|chr9 (74926466-74927107)
	1-598, gnl\|rheMac2\|chr14 (72441498-72442151)
	1-598, gnl\|rn3\|chr1 (157805242-157804617)

	fhi (0.339155)
	ton (0.1755)
	nmm (0.132802)
	ese (0.126502)
	nbm (0.0993246)