Non-Coding RNA Search

Ss1.1-Pig1-82E20.5

Sequence:


               
               GTTTGTGGTACGCAGATTCTTCAGGTCATGACTCCCAGAGGGCCCTTTGGGGTCCTGAGA
CCCCTTTATGGACTTTGGCCCAGCCTTCTCCCCTCCCCTCCTCCCCTGCAGGGGTCCCCC
CGCAAGAGTACAGGAGCTTTAGCAAGTGGGCACCCCAGCATTGGAGGCCCCCATGAAGGA
GTCGGTCAGGCTGCAGGGGTGCCCCATCATTGTGTGGTGCTAATGGGCCCCTCTCAGAGG
GGCTGTGACCCCTCCCCTAGCCCATCTGCTGGGCGTGGAGAGATTGATAACTTGGGGGAT
AGGCCAGGAGCCACTTCTCCCCAAGGAGTTTTAGCTTTTCCTGATACCCTTGGGAGGACA
GCCCATCCCCAGCACTCTGCCCAAGGCTAGGATGGCTGGGGGGGTGGGGGGGCGGCAGCA
GCTCTGCCCCAGGATTCAGCCCTTTGGGAAGGTCAGAGCTTGAGAGCTGGGCCTGGAGCC
CAGGCCCTTCCTGAACATCATATTCTCTGGGAACAGGACTGGTGGAGGGTGGGGGGCGGG
GAGGTGCTGCTGGACTTCCCCTCTCCCCCCCACCCCCCCACCCCACATTGCCACTGCAGT
TGGACTCAGGGATTCTGGGGCGGGGGTGCAGACCAGAGCTGTCTGAAGTCCTCCATCAGC
TCCTGCCAAGCCTGCCTCTTGAGGTCCTCCCCGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGTGGTACGCAGATTCTTCAGGTCATGACTCCCAGAGGGCCCTTTGGGGTCCTGAGA
CCCCTTTATGGACTTTGGCCCAGCCTTCTCCCCTCCCCTCCTCCCCTGCAGGGGTCCCCC
CGCAAGAGTACAGGAGCTTTAGCAAGTGGGCACCCCAGCATTGGAGGCCCCCATGAAGGA
GTCGGTCAGGCTGCAGGGGTGCCCCATCATTGTGTGGTGCTAATGGGCCCCTCTCAGAGG
GGCTGTGACCCCTCCCCTAGCCCATCTGCTGGGCGTGGAGAGATTGATAACTTGGGGGAT
AGGCCAGGAGCCACTTCTCCCCAAGGAGTTTTAGCTTTTCCTGATACCCTTGGGAGGACA
GCCCATCCCCAGCACTCTGCCCAAGGCTAGGATGGCTGGGGGGGTGGGGGGGCGGCAGCA
GCTCTGCCCCAGGATTCAGCCCTTTGGGAAGGTCAGAGCTTGAGAGCTGGGCCTGGAGCC
CAGGCCCTTCCTGAACATCATATTCTCTGGGAACAGGACTGGTGGAGGGTGGGGGGCGGG
GAGGTGCTGCTGGACTTCCCCTCTCCCCCCCACCCCCCCACCCCACATTGCCACTGCAGT
TGGACTCAGGGATTCTGGGGCGGGGGTGCAGACCAGAGCTGTCTGAAGTCCTCCATCAGC
TCCTGCCAAGCCTGCCTCTTGAGGTCCTCCCCGTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-250, - strand, RNAz p=0.997401

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-250, - strand, RNAz p=0.997401

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               157-244, + strand, RNAmicro p=0.995447

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               157-244, + strand, RNAmicro p=0.995447

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-268, gnl|bosTau2|chr1 (14359019-14359308)
               

               
               1-268, gnl|Hg17|chr20 (30741673-30741393)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-268, gnl|bosTau2|chr1 (14359019-14359308)
               

               
               1-268, gnl|Hg17|chr20 (30741673-30741393)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	1-268, gnl\|bosTau2\|chr1 (14359019-14359308)
	1-268, gnl\|Hg17\|chr20 (30741673-30741393)