Non-Coding RNA Search

Ss1.1-Pig1-82I17.5

Sequence:


               
               TCATGCCCTGTGCCCAGTGGCTATGCCCTGAGAACACTCTGGTTTCCCCACCCAAGGGCA
GACAAGTTTTTTTTTTCCCTTGGATCGGCCAAGCCAAACTTGGAGCTTTGACAAAGAACT
TTCCTAGGAAACAACTGACGACCAGAACAAAATACAAACAAGGGCACACAAAGGCATGCG
CCGTTTCCTTCCCAAGGATGACTGGCCTCTGCCCCAGGATGACCCTCCACGCCACTTTCC
AGTGACAGACGTTTGCTCCTCTTCTTGAACTGGGGTGGGGAACCCCACCCAAAAGCCCCC
TTGGTTAGTTGTTAGGCAGTTCCCTTCCCTGTCTCCCTAGGGCAGGGGCTGGAGCGGCCC
AGAGCAGTAGAGGCTTGGCCATTCCCGGTTGGTCCTAGAACTCTTCCGGCCTCACTGCCC
CAGGCTCCCATGGAGCTACACCCTGGTGCCTTTGCCCTACATCCTTTGTAACTCTGTGTA
TTTGCTCAAGCTATTTCCTTAGCCTGGAAGCCTCCCCCACCATTTGCTGGAGAACTCCTA
TGCATCCCTTAGAACCCTGCTCAGAAAGCACAACTTCTGCGAAGGCTTCTATCCTATTTT
GTCTTCCCCAGAATTGATGGCTCCCCTCTCCCCTGGACTCCCGCAGCACACCATAACATC
TATGGAAGTGTGGATGTTGCGTTTACTTTCTCGTTCATTTGTGTCTGCATCTTCAACTAG
ACTGTGAGCTCCTTGTGGTCAGGAATTGAGTCTTGTTCATTTATGTATCTTTGGGATCTA
GCCCAGTGTCCCAGTGTCCCGCTTGGAGCAAGTAGGCAGGTATTCAATAAATGTTGTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATGCCCTGTGCCCAGTGGCTATGCCCTGAGAACACTCTGGTTTCCCCACCCAAGGGCA
GACAAGTTTTTTTTTTCCCTTGGATCGGCCAAGCCAAACTTGGAGCTTTGACAAAGAACT
TTCCTAGGAAACAACTGACGACCAGAACAAAATACAAACAAGGGCACACAAAGGCATGCG
CCGTTTCCTTCCCAAGGATGACTGGCCTCTGCCCCAGGATGACCCTCCACGCCACTTTCC
AGTGACAGACGTTTGCTCCTCTTCTTGAACTGGGGTGGGGAACCCCACCCAAAAGCCCCC
TTGGTTAGTTGTTAGGCAGTTCCCTTCCCTGTCTCCCTAGGGCAGGGGCTGGAGCGGCCC
AGAGCAGTAGAGGCTTGGCCATTCCCGGTTGGTCCTAGAACTCTTCCGGCCTCACTGCCC
CAGGCTCCCATGGAGCTACACCCTGGTGCCTTTGCCCTACATCCTTTGTAACTCTGTGTA
TTTGCTCAAGCTATTTCCTTAGCCTGGAAGCCTCCCCCACCATTTGCTGGAGAACTCCTA
TGCATCCCTTAGAACCCTGCTCAGAAAGCACAACTTCTGCGAAGGCTTCTATCCTATTTT
GTCTTCCCCAGAATTGATGGCTCCCCTCTCCCCTGGACTCCCGCAGCACACCATAACATC
TATGGAAGTGTGGATGTTGCGTTTACTTTCTCGTTCATTTGTGTCTGCATCTTCAACTAG
ACTGTGAGCTCCTTGTGGTCAGGAATTGAGTCTTGTTCATTTATGTATCTTTGGGATCTA
GCCCAGTGTCCCAGTGTCCCGCTTGGAGCAAGTAGGCAGGTATTCAATAAATGTTGTTGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               202-356, - strand, RNAz p=0.997791
               

               
               516-672, - strand, RNAz p=0.962143

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-356, - strand, RNAz p=0.997791
               

               
               516-672, - strand, RNAz p=0.962143

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               146-292, - strand, RNAmicro p=0.905623

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               146-292, - strand, RNAmicro p=0.905623

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-840, gnl|bosTau2|chr5 (60779431-60780248)
               

               
               6-840, gnl|Hg17|chr12 (6327090-6326279)
               

               
               6-840, gnl|Mm7|chr6 (125370551-125371240)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-840, gnl|bosTau2|chr5 (60779431-60780248)
               

               
               6-840, gnl|Hg17|chr12 (6327090-6326279)
               

               
               6-840, gnl|Mm7|chr6 (125370551-125371240)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pgl (0.236967)
               

               
               ton (0.1755)
               

               
               csk (0.140746)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               ton (0.1755)
               

               
               csk (0.140746)
               

               
               eje (0.0988338)

	202-356, - strand, RNAz p=0.997791
	516-672, - strand, RNAz p=0.962143

	6-840, gnl\|bosTau2\|chr5 (60779431-60780248)
	6-840, gnl\|Hg17\|chr12 (6327090-6326279)
	6-840, gnl\|Mm7\|chr6 (125370551-125371240)