Non-Coding RNA Search

Ss1.1-Pig1-82M23.5

Sequence:


               
               AACTCTGCTGGCACTCTGCTTCTTGCTCCCTCAGCAGCTGGGTTTAGAAGGCACTTGCCA
AATTGAGTAACTAGAGCTCAGGAGCTTATTTTTGATGGATCTTCTCCTTGGGATCAGTTT
TTTGCTTCCAGAACAAGAAAATGTTTAGTCTCACTCGCATGGACCATTTTGGTCTCACAT
GGGAGCCCTTCTGAGATAAAATGGGCCCCAGGAGGGAGTACTGTCTGCTTTGCTACTTGA
TGAGCTCCTTCTAGCTTGCCGATGTGACTGATGTGACCAAAGGATCTGTTTCCACAGTAG
AGGCCTGAAAGGGTAATTGGAGGGGGAACATGTGATGAAATATTTTTTTAATTCCTTTTT
TGGTTTGACCTCACCAGGAAACTTAGACCTTATGGAGTATGATTTAATAAAGTTTGATTT
TGAGAATCCCAGTTTTGTGAAGTATTCCGAGTATTTCTGTTTAAAAGCAATATCAAGTCC
GATGTTAAAACGTGCGCTCATCTCTTTAAAAGCTGTCAGTGGCCCTTAAGGGATAGCAGT
ATTGCTTATAAACAAAAGATTGAATCAGGGGTGAGGAGAAAGGATGGGAGATCTGGGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCTGCTGGCACTCTGCTTCTTGCTCCCTCAGCAGCTGGGTTTAGAAGGCACTTGCCA
AATTGAGTAACTAGAGCTCAGGAGCTTATTTTTGATGGATCTTCTCCTTGGGATCAGTTT
TTTGCTTCCAGAACAAGAAAATGTTTAGTCTCACTCGCATGGACCATTTTGGTCTCACAT
GGGAGCCCTTCTGAGATAAAATGGGCCCCAGGAGGGAGTACTGTCTGCTTTGCTACTTGA
TGAGCTCCTTCTAGCTTGCCGATGTGACTGATGTGACCAAAGGATCTGTTTCCACAGTAG
AGGCCTGAAAGGGTAATTGGAGGGGGAACATGTGATGAAATATTTTTTTAATTCCTTTTT
TGGTTTGACCTCACCAGGAAACTTAGACCTTATGGAGTATGATTTAATAAAGTTTGATTT
TGAGAATCCCAGTTTTGTGAAGTATTCCGAGTATTTCTGTTTAAAAGCAATATCAAGTCC
GATGTTAAAACGTGCGCTCATCTCTTTAAAAGCTGTCAGTGGCCCTTAAGGGATAGCAGT
ATTGCTTATAAACAAAAGATTGAATCAGGGGTGAGGAGAAAGGATGGGAGATCTGGGTGA

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-212, gnl|bosTau2|chr15 (15169356-15169145)
               

               
               1-212, gnl|canFam2|chr5 (18381326-18381078)
               

               
               1-212, gnl|dasNov1|scaffold_82984 (309-566)
               

               
               1-212, gnl|echTel1|scaffold_287748 (40006-39758)
               

               
               1-212, gnl|hg17|chr11 (117736051-117736303)
               

               
               1-212, gnl|Hg17|chr11 (117736095-117736297)
               

               
               1-212, gnl|loxAfr1|scaffold_17764 (509-283)
               

               
               1-212, gnl|mm7|chr9 (44899411-44899182)
               

               
               1-212, gnl|Mm7|chr9 (44899369-44899184)
               

               
               1-212, gnl|oryCun1|scaffold_196550 (47365-47137)
               

               
               1-212, gnl|panTro1|chr9 (119743253-119743505)
               

               
               1-212, gnl|rheMac2|chr14 (116740590-116740842)
               

               
               1-212, gnl|rn3|chr8 (47929496-47929259)
               


               
               370-582, gnl|bosTau2|chr15 (15168593-15168376)
               

               
               370-582, gnl|Hg17|chr11 (117736485-117736694)
               

               
               370-582, gnl|Mm7|chr9 (44898986-44898679)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-212, gnl|bosTau2|chr15 (15169356-15169145)
               

               
               1-212, gnl|canFam2|chr5 (18381326-18381078)
               

               
               1-212, gnl|dasNov1|scaffold_82984 (309-566)
               

               
               1-212, gnl|echTel1|scaffold_287748 (40006-39758)
               

               
               1-212, gnl|hg17|chr11 (117736051-117736303)
               

               
               1-212, gnl|Hg17|chr11 (117736095-117736297)
               

               
               1-212, gnl|loxAfr1|scaffold_17764 (509-283)
               

               
               1-212, gnl|mm7|chr9 (44899411-44899182)
               

               
               1-212, gnl|Mm7|chr9 (44899369-44899184)
               

               
               1-212, gnl|oryCun1|scaffold_196550 (47365-47137)
               

               
               1-212, gnl|panTro1|chr9 (119743253-119743505)
               

               
               1-212, gnl|rheMac2|chr14 (116740590-116740842)
               

               
               1-212, gnl|rn3|chr8 (47929496-47929259)
               


               
               370-582, gnl|bosTau2|chr15 (15168593-15168376)
               

               
               370-582, gnl|Hg17|chr11 (117736485-117736694)
               

               
               370-582, gnl|Mm7|chr9 (44898986-44898679)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               med (0.116252)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	1-212, gnl\|bosTau2\|chr15 (15169356-15169145)
	1-212, gnl\|canFam2\|chr5 (18381326-18381078)
	1-212, gnl\|dasNov1\|scaffold_82984 (309-566)
	1-212, gnl\|echTel1\|scaffold_287748 (40006-39758)
	1-212, gnl\|hg17\|chr11 (117736051-117736303)
	1-212, gnl\|Hg17\|chr11 (117736095-117736297)
	1-212, gnl\|loxAfr1\|scaffold_17764 (509-283)
	1-212, gnl\|mm7\|chr9 (44899411-44899182)
	1-212, gnl\|Mm7\|chr9 (44899369-44899184)
	1-212, gnl\|oryCun1\|scaffold_196550 (47365-47137)
	1-212, gnl\|panTro1\|chr9 (119743253-119743505)
	1-212, gnl\|rheMac2\|chr14 (116740590-116740842)
	1-212, gnl\|rn3\|chr8 (47929496-47929259)

	370-582, gnl\|bosTau2\|chr15 (15168593-15168376)
	370-582, gnl\|Hg17\|chr11 (117736485-117736694)
	370-582, gnl\|Mm7\|chr9 (44898986-44898679)