Non-Coding RNA Search

Ss1.1-Pig1-83B23.5

Sequence:


               
               AGGTACGATCCTCACAGCCGAGGGACTCAGGGGTTGTGTTTTGGGGTCTGAGAGCCTCCA
CTCACCTCACTGCCACACAAGAGAAATGAGACAATCAAAGCCCAACAGGGTGGCACTCCC
ATCCATCCGCTGGGGCGGGGCATCCACACACAAGGCTGGGGCGCGGGCAGGCTAGGCTGG
GGCCAAGGCCTCACAGGGAAGGGCTCGCTCCCCTGCCAGGGAGCTTAACATCTGAAAGGA
CCAGGGACCAGGAACACGGTGCAGCCCAAGGGCAGCTGGGAGCCCGCCTGGATCGGGGTT
TGGGAAGGGAGGGCGAGTGTCGCGGAGAGCGTATGGATAGCGTCGGGGCCTCCTTGCCCC
CCTCATTCTTTTGCTCTTGCATCCTGTCATTTCTGTTCCTGGCCCTCATGCCTCCTGGGG
GCTGTGGGCCTCAGACTTTATTCCCTGATTCATAGCTGCTGCTTGTTAAGTTGGGGTTAC
GGGGGGCAGGGGGGAGAGGACCCAGAGGACAGCCCCCAGAGGCCCTGCCTCCCCGGCGAC
CCCTGCCTTCGGCTCTAGTGTGTGATCTACAGAGCATGCTCCACGAGACCCTGCCCCACC
TCACTGTCATCACTAATAAACACCATGCACAGTCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTACGATCCTCACAGCCGAGGGACTCAGGGGTTGTGTTTTGGGGTCTGAGAGCCTCCA
CTCACCTCACTGCCACACAAGAGAAATGAGACAATCAAAGCCCAACAGGGTGGCACTCCC
ATCCATCCGCTGGGGCGGGGCATCCACACACAAGGCTGGGGCGCGGGCAGGCTAGGCTGG
GGCCAAGGCCTCACAGGGAAGGGCTCGCTCCCCTGCCAGGGAGCTTAACATCTGAAAGGA
CCAGGGACCAGGAACACGGTGCAGCCCAAGGGCAGCTGGGAGCCCGCCTGGATCGGGGTT
TGGGAAGGGAGGGCGAGTGTCGCGGAGAGCGTATGGATAGCGTCGGGGCCTCCTTGCCCC
CCTCATTCTTTTGCTCTTGCATCCTGTCATTTCTGTTCCTGGCCCTCATGCCTCCTGGGG
GCTGTGGGCCTCAGACTTTATTCCCTGATTCATAGCTGCTGCTTGTTAAGTTGGGGTTAC
GGGGGGCAGGGGGGAGAGGACCCAGAGGACAGCCCCCAGAGGCCCTGCCTCCCCGGCGAC
CCCTGCCTTCGGCTCTAGTGTGTGATCTACAGAGCATGCTCCACGAGACCCTGCCCCACC
TCACTGTCATCACTAATAAACACCATGCACAGTCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               196-287, - strand, RNAz p=0.545384

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-287, - strand, RNAz p=0.545384

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-632, gnl|bosTau2|chr5 (26272153-26271539)
               

               
               1-632, gnl|canFam2|chr27 (8716303-8715587)
               

               
               1-632, gnl|dasNov1|scaffold_2209 (46236-45521)
               

               
               1-632, gnl|echTel1|scaffold_325175 (35863-35133)
               

               
               1-632, gnl|hg17|chr12 (47508143-47508845)
               

               
               1-632, gnl|Hg17|chr12 (47508370-47508989)
               

               
               1-632, gnl|loxAfr1|scaffold_15255 (44319-45034)
               

               
               1-632, gnl|mm7|chr15 (98628959-98629570)
               

               
               1-632, gnl|Mm7|chr15 (98629171-98629726)
               

               
               1-632, gnl|monDom2|scaffold_388 (78615-79218)
               

               
               1-632, gnl|oryCun1|scaffold_186849 (623-1349)
               

               
               1-632, gnl|panTro1|chr10 (48684571-48685273)
               

               
               1-632, gnl|rheMac2|chr11 (45951697-45952399)
               

               
               1-632, gnl|rn3|chr7 (137469934-137470551)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-632, gnl|bosTau2|chr5 (26272153-26271539)
               

               
               1-632, gnl|canFam2|chr27 (8716303-8715587)
               

               
               1-632, gnl|dasNov1|scaffold_2209 (46236-45521)
               

               
               1-632, gnl|echTel1|scaffold_325175 (35863-35133)
               

               
               1-632, gnl|hg17|chr12 (47508143-47508845)
               

               
               1-632, gnl|Hg17|chr12 (47508370-47508989)
               

               
               1-632, gnl|loxAfr1|scaffold_15255 (44319-45034)
               

               
               1-632, gnl|mm7|chr15 (98628959-98629570)
               

               
               1-632, gnl|Mm7|chr15 (98629171-98629726)
               

               
               1-632, gnl|monDom2|scaffold_388 (78615-79218)
               

               
               1-632, gnl|oryCun1|scaffold_186849 (623-1349)
               

               
               1-632, gnl|panTro1|chr10 (48684571-48685273)
               

               
               1-632, gnl|rheMac2|chr11 (45951697-45952399)
               

               
               1-632, gnl|rn3|chr7 (137469934-137470551)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               hyp (0.142837)

	1-632, gnl\|bosTau2\|chr5 (26272153-26271539)
	1-632, gnl\|canFam2\|chr27 (8716303-8715587)
	1-632, gnl\|dasNov1\|scaffold_2209 (46236-45521)
	1-632, gnl\|echTel1\|scaffold_325175 (35863-35133)
	1-632, gnl\|hg17\|chr12 (47508143-47508845)
	1-632, gnl\|Hg17\|chr12 (47508370-47508989)
	1-632, gnl\|loxAfr1\|scaffold_15255 (44319-45034)
	1-632, gnl\|mm7\|chr15 (98628959-98629570)
	1-632, gnl\|Mm7\|chr15 (98629171-98629726)
	1-632, gnl\|monDom2\|scaffold_388 (78615-79218)
	1-632, gnl\|oryCun1\|scaffold_186849 (623-1349)
	1-632, gnl\|panTro1\|chr10 (48684571-48685273)
	1-632, gnl\|rheMac2\|chr11 (45951697-45952399)
	1-632, gnl\|rn3\|chr7 (137469934-137470551)