Ss1.1-Pig1-83K18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACAAGAAGACAGATGAGATCGTGGCTCTGAAGCGGCTGAAGATGGAGAAGGAGAAGGA GGGCTTCCCCATCACATCGCTGAGGGAGATCAACACCATCCTCAAGGCGCAGCACCCCAA CATCGTCACCGTCAGGGAGATCGTGGTGGGCAGCAACATGGACAAGATCTACATCGTGAT GAACTACGTGGAGCACGACCTCAAGAGCCTCATGGAGACCATGAAGCAGCCCTTCTTGCC AGGGGAGGTGAAGACCTTGATGATCCAGCTGCTGCGCGGCGTGAAGCACCTGCACGACAA CTGGATCCTGCACCGCGACCTCAAGACGTCCAACCTGCTGCTGAGCCACGCGGGCATCCT CAAGGTGGGGGACTTCGGGCTGGCACGGGAGTACGGGTCCCCCCTGAAGGCCTACACCCC GGTCGTGGTGACCCTGTGGTACCGTGCCCCGGAACTGCTGCTCGGGGCCAAGGAGTACTC CACGGCCGTGGACATGTGGTCGGTGGGCTGCATCTTCGGGGAGCTGCTCACCCAGAAGCC TCTGTTCCCGGGCAAGTCGGACATCGACCAGATCAACAAAGTGTTCAAGGACCTGGGCAC CCCCAGCGAGAAGATCTGGCCGGGGTACAATGATCTCCCCGCGGTCAAGAAGATGACCTT CACCGAGTACCCATACAACAACCTCCGCAAGCGCTTCGGCGCTCTGCTCTCGGACCAGGG CTTCGACCTCATGAACAAGTTCCTGACCTACTTCCCCGGGCGGAGGGTCAGTGCCGAGGA CGGCCTGAAGCACGAGTATTTCCGCGAGACACCCCTCCCCATCGACCCCTCCATGTTCCC CACGTGGCCCGCCAAGAGCGAGCAGCAGAGAGTGAAGCGAGGCACCAGCCCGCGACCCCC CGAGGGAGGCCTGGGCTACAGCCAGCTGGGCGACGACGACCTGAAGGAGACGGGTTTCCA CCTCACCACCACCAACCAGGGTGCCTCGGCCGCAGGCCCGGGCTTCAGCCTCAAGTTCTG AGGTTCGGCCCGCCTGGAGCTGTTGACCTTGGGGGCTTGGGGGCGCCTGGGTCCGGACCC AGGTCCCACTCTGGAGAGGCGCGGCAGCCGGGGACCCACCTCCAGTCTCGGACTGCTAGT CTTGGGGAGTTTTCCACGTTTTGGTTTTATTTTATCTTGTATATTTGTAGAATTAAATCA CATTTTCCTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACAAGAAGACAGATGAGATCGTGGCTCTGAAGCGGCTGAAGATGGAGAAGGAGAAGGA GGGCTTCCCCATCACATCGCTGAGGGAGATCAACACCATCCTCAAGGCGCAGCACCCCAA CATCGTCACCGTCAGGGAGATCGTGGTGGGCAGCAACATGGACAAGATCTACATCGTGAT GAACTACGTGGAGCACGACCTCAAGAGCCTCATGGAGACCATGAAGCAGCCCTTCTTGCC AGGGGAGGTGAAGACCTTGATGATCCAGCTGCTGCGCGGCGTGAAGCACCTGCACGACAA CTGGATCCTGCACCGCGACCTCAAGACGTCCAACCTGCTGCTGAGCCACGCGGGCATCCT CAAGGTGGGGGACTTCGGGCTGGCACGGGAGTACGGGTCCCCCCTGAAGGCCTACACCCC GGTCGTGGTGACCCTGTGGTACCGTGCCCCGGAACTGCTGCTCGGGGCCAAGGAGTACTC CACGGCCGTGGACATGTGGTCGGTGGGCTGCATCTTCGGGGAGCTGCTCACCCAGAAGCC TCTGTTCCCGGGCAAGTCGGACATCGACCAGATCAACAAAGTGTTCAAGGACCTGGGCAC CCCCAGCGAGAAGATCTGGCCGGGGTACAATGATCTCCCCGCGGTCAAGAAGATGACCTT CACCGAGTACCCATACAACAACCTCCGCAAGCGCTTCGGCGCTCTGCTCTCGGACCAGGG CTTCGACCTCATGAACAAGTTCCTGACCTACTTCCCCGGGCGGAGGGTCAGTGCCGAGGA CGGCCTGAAGCACGAGTATTTCCGCGAGACACCCCTCCCCATCGACCCCTCCATGTTCCC CACGTGGCCCGCCAAGAGCGAGCAGCAGAGAGTGAAGCGAGGCACCAGCCCGCGACCCCC CGAGGGAGGCCTGGGCTACAGCCAGCTGGGCGACGACGACCTGAAGGAGACGGGTTTCCA CCTCACCACCACCAACCAGGGTGCCTCGGCCGCAGGCCCGGGCTTCAGCCTCAAGTTCTG AGGTTCGGCCCGCCTGGAGCTGTTGACCTTGGGGGCTTGGGGGCGCCTGGGTCCGGACCC AGGTCCCACTCTGGAGAGGCGCGGCAGCCGGGGACCCACCTCCAGTCTCGGACTGCTAGT CTTGGGGAGTTTTCCACGTTTTGGTTTTATTTTATCTTGTATATTTGTAGAATTAAATCA CATTTTCCTTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 250-367, - strand, RNAz p=0.573998 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 250-367, - strand, RNAz p=0.573998 |
| Aligned organism(s): 93 entry(ies) | More info |
| Aligned organism(s): 93 entry(ies) | Help | Less info |
| 1-686, gnl|bosTau2|chr25 (12330375-12331037) | |
| 1-686, gnl|Hg17|chr1_random (1335019-1333273) | |
| 1-686, gnl|Mm7|chr4 (154637021-154638650) | |
| 12-140, gnl|bosTau2|chr16 (37686327-37686455) | |
| 12-140, gnl|canFam2|chr5 (59701192-59701283) | |
| 12-140, gnl|canFam2|chr5 (59701189-59701283) | |
| 12-140, gnl|danRer3|chrNA (116865578-116865669) | |
| 12-140, gnl|danRer3|chrNA (116865550-116865669) | |
| 12-140, gnl|dasNov1|scaffold_96490 (4313-4222) | |
| 12-140, gnl|dasNov1|scaffold_96490 (4316-4222) | |
| 12-140, gnl|echTel1|scaffold_263700 (1826-1735) | |
| 12-140, gnl|echTel1|scaffold_263700 (1829-1735) | |
| 12-140, gnl|fr1|chrUn (103297440-103297531) | |
| 12-140, gnl|fr1|chrUn (103297440-103297531) | |
| 12-140, gnl|galGal2|chr21 (1920624-1920533) | |
| 12-140, gnl|galGal2|chr21 (1920627-1920533) | |
| 12-140, gnl|hg17|chr1 (1668501-1668592) | |
| 12-140, gnl|Hg17|chr1 (1668629-1668501) | |
| 12-140, gnl|hg17|chr1_random (1271684-1271778) | |
| 12-140, gnl|loxAfr1|scaffold_47223 (4745-4667) | |
| 12-140, gnl|loxAfr1|scaffold_47223 (4745-4667) | |
| 12-140, gnl|mm7|chr4 (154637152-154637061) | |
| 12-140, gnl|mm7|chr4 (154637155-154637061) | |
| 12-140, gnl|Mm7|chr4 (154637022-154637150) | |
| 12-140, gnl|monDom2|scaffold_196 (625352-625443) | |
| 12-140, gnl|monDom2|scaffold_196 (625349-625443) | |
| 12-140, gnl|oryCun1|scaffold_170691 (2028-2119) | |
| 12-140, gnl|oryCun1|scaffold_170691 (2025-2119) | |
| 12-140, gnl|panTro1|chr1 (1526818-1526909) | |
| 12-140, gnl|panTro1|chr1 (1526815-1526909) | |
| 12-140, gnl|rheMac2|chr1 (4700306-4700397) | |
| 12-140, gnl|rheMac2|chr1 (4700303-4700397) | |
| 12-140, gnl|rn3|chr5 (172494374-172494283) | |
| 12-140, gnl|rn3|chr5 (172494377-172494283) | |
| 12-140, gnl|tetNig1|chrUn_random (28241579-28241489) | |
| 12-140, gnl|tetNig1|chrUn_random (28241582-28241489) | |
| 12-140, gnl|xenTro1|scaffold_609 (495338-495247) | |
| 12-140, gnl|xenTro1|scaffold_609 (495341-495247) | |
| 240-367, gnl|bosTau2|chr16 (37686943-37687070) | |
| 240-367, gnl|canFam2|chr5 (59700579-59700712) | |
| 240-367, gnl|danRer3|chrNA (116864996-116865125) | |
| 240-367, gnl|dasNov1|scaffold_96490 (5194-5068) | |
| 240-367, gnl|echTel1|scaffold_263700 (2461-2327) | |
| 240-367, gnl|fr1|chrUn (103296901-103297030) | |
| 240-367, gnl|galGal2|chr21 (1921661-1921532) | |
| 240-367, gnl|hg17|chr1 (1667820-1667949) | |
| 240-367, gnl|Hg17|chr1 (1667948-1667821) | |
| 240-367, gnl|loxAfr1|scaffold_47223 (5170-5068) | |
| 240-367, gnl|mm7|chr4 (154637952-154637823) | |
| 240-367, gnl|Mm7|chr4 (154637822-154637949) | |
| 240-367, gnl|monDom2|scaffold_196 (623569-623698) | |
| 240-367, gnl|oryCun1|scaffold_170691 (1552-1681) | |
| 240-367, gnl|panTro1|chr1 (1526137-1526266) | |
| 240-367, gnl|rheMac2|chr1 (4699628-4699757) | |
| 240-367, gnl|rn3|chr5 (172495175-172495046) | |
| 240-367, gnl|tetNig1|chrUn_random (28241979-28241850) | |
| 468-590, gnl|bosTau2|chr16 (37687330-37687452) | |
| 468-590, gnl|canFam2|chr5 (59700206-59700350) | |
| 468-590, gnl|canFam2|chr5 (59700202-59700346) | |
| 468-590, gnl|danRer3|chrNA (116863168-116863288) | |
| 468-590, gnl|danRer3|chrNA (116863168-116863304) | |
| 468-590, gnl|dasNov1|scaffold_96490 (5502-5349) | |
| 468-590, gnl|dasNov1|scaffold_96490 (5506-5361) | |
| 468-590, gnl|echTel1|scaffold_263700 (2851-2704) | |
| 468-590, gnl|echTel1|scaffold_263700 (2854-2716) | |
| 468-590, gnl|fr1|chrUn (103295593-103295746) | |
| 468-590, gnl|fr1|chrUn (103295589-103295729) | |
| 468-590, gnl|galGal2|chr21 (1922826-1922674) | |
| 468-590, gnl|galGal2|chr21 (1922830-1922692) | |
| 468-590, gnl|hg17|chr1 (1667424-1667578) | |
| 468-590, gnl|Hg17|chr1 (1667546-1667424) | |
| 468-590, gnl|hg17|chr1_random (1270606-1270750) | |
| 468-590, gnl|loxAfr1|scaffold_164054 (4417-4567) | |
| 468-590, gnl|loxAfr1|scaffold_164054 (4414-4553) | |
| 468-590, gnl|mm7|chr4 (154638378-154638223) | |
| 468-590, gnl|mm7|chr4 (154638382-154638237) | |
| 468-590, gnl|Mm7|chr4 (154638254-154638376) | |
| 468-590, gnl|monDom2|scaffold_196 (622423-622566) | |
| 468-590, gnl|oryCun1|scaffold_170691 (1172-1322) | |
| 468-590, gnl|oryCun1|scaffold_170691 (1168-1311) | |
| 468-590, gnl|panTro1|chr1 (1525740-1525893) | |
| 468-590, gnl|panTro1|chr1 (1525736-1525879) | |
| 468-590, gnl|rheMac2|chr1 (4699223-4699377) | |
| 468-590, gnl|rheMac2|chr1 (4699219-4699363) | |
| 468-590, gnl|rn3|chr5 (172495603-172495448) | |
| 468-590, gnl|rn3|chr5 (172495607-172495462) | |
| 468-590, gnl|tetNig1|chrUn_random (28242753-28242633) | |
| 468-590, gnl|tetNig1|chrUn_random (28242756-28242633) | |
| 468-590, gnl|xenTro1|scaffold_609 (499686-499527) | |
| 468-590, gnl|xenTro1|scaffold_609 (499690-499541) | |
| 736-929, gnl|bosTau2|chr16 (37687777-37687970) | |
| 736-929, gnl|Hg17|chr1 (1666873-1666680) | |
| 736-929, gnl|Mm7|chr4 (154638962-154639154) |
| Aligned organism(s): 93 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-686, gnl|bosTau2|chr25 (12330375-12331037) | |
| 1-686, gnl|Hg17|chr1_random (1335019-1333273) | |
| 1-686, gnl|Mm7|chr4 (154637021-154638650) | |
| 12-140, gnl|bosTau2|chr16 (37686327-37686455) | |
| 12-140, gnl|canFam2|chr5 (59701192-59701283) | |
| 12-140, gnl|canFam2|chr5 (59701189-59701283) | |
| 12-140, gnl|danRer3|chrNA (116865578-116865669) | |
| 12-140, gnl|danRer3|chrNA (116865550-116865669) | |
| 12-140, gnl|dasNov1|scaffold_96490 (4313-4222) | |
| 12-140, gnl|dasNov1|scaffold_96490 (4316-4222) | |
| 12-140, gnl|echTel1|scaffold_263700 (1826-1735) | |
| 12-140, gnl|echTel1|scaffold_263700 (1829-1735) | |
| 12-140, gnl|fr1|chrUn (103297440-103297531) | |
| 12-140, gnl|fr1|chrUn (103297440-103297531) | |
| 12-140, gnl|galGal2|chr21 (1920624-1920533) | |
| 12-140, gnl|galGal2|chr21 (1920627-1920533) | |
| 12-140, gnl|hg17|chr1 (1668501-1668592) | |
| 12-140, gnl|Hg17|chr1 (1668629-1668501) | |
| 12-140, gnl|hg17|chr1_random (1271684-1271778) | |
| 12-140, gnl|loxAfr1|scaffold_47223 (4745-4667) | |
| 12-140, gnl|loxAfr1|scaffold_47223 (4745-4667) | |
| 12-140, gnl|mm7|chr4 (154637152-154637061) | |
| 12-140, gnl|mm7|chr4 (154637155-154637061) | |
| 12-140, gnl|Mm7|chr4 (154637022-154637150) | |
| 12-140, gnl|monDom2|scaffold_196 (625352-625443) | |
| 12-140, gnl|monDom2|scaffold_196 (625349-625443) | |
| 12-140, gnl|oryCun1|scaffold_170691 (2028-2119) | |
| 12-140, gnl|oryCun1|scaffold_170691 (2025-2119) | |
| 12-140, gnl|panTro1|chr1 (1526818-1526909) | |
| 12-140, gnl|panTro1|chr1 (1526815-1526909) | |
| 12-140, gnl|rheMac2|chr1 (4700306-4700397) | |
| 12-140, gnl|rheMac2|chr1 (4700303-4700397) | |
| 12-140, gnl|rn3|chr5 (172494374-172494283) | |
| 12-140, gnl|rn3|chr5 (172494377-172494283) | |
| 12-140, gnl|tetNig1|chrUn_random (28241579-28241489) | |
| 12-140, gnl|tetNig1|chrUn_random (28241582-28241489) | |
| 12-140, gnl|xenTro1|scaffold_609 (495338-495247) | |
| 12-140, gnl|xenTro1|scaffold_609 (495341-495247) | |
| 240-367, gnl|bosTau2|chr16 (37686943-37687070) | |
| 240-367, gnl|canFam2|chr5 (59700579-59700712) | |
| 240-367, gnl|danRer3|chrNA (116864996-116865125) | |
| 240-367, gnl|dasNov1|scaffold_96490 (5194-5068) | |
| 240-367, gnl|echTel1|scaffold_263700 (2461-2327) | |
| 240-367, gnl|fr1|chrUn (103296901-103297030) | |
| 240-367, gnl|galGal2|chr21 (1921661-1921532) | |
| 240-367, gnl|hg17|chr1 (1667820-1667949) | |
| 240-367, gnl|Hg17|chr1 (1667948-1667821) | |
| 240-367, gnl|loxAfr1|scaffold_47223 (5170-5068) | |
| 240-367, gnl|mm7|chr4 (154637952-154637823) | |
| 240-367, gnl|Mm7|chr4 (154637822-154637949) | |
| 240-367, gnl|monDom2|scaffold_196 (623569-623698) | |
| 240-367, gnl|oryCun1|scaffold_170691 (1552-1681) | |
| 240-367, gnl|panTro1|chr1 (1526137-1526266) | |
| 240-367, gnl|rheMac2|chr1 (4699628-4699757) | |
| 240-367, gnl|rn3|chr5 (172495175-172495046) | |
| 240-367, gnl|tetNig1|chrUn_random (28241979-28241850) | |
| 468-590, gnl|bosTau2|chr16 (37687330-37687452) | |
| 468-590, gnl|canFam2|chr5 (59700206-59700350) | |
| 468-590, gnl|canFam2|chr5 (59700202-59700346) | |
| 468-590, gnl|danRer3|chrNA (116863168-116863288) | |
| 468-590, gnl|danRer3|chrNA (116863168-116863304) | |
| 468-590, gnl|dasNov1|scaffold_96490 (5502-5349) | |
| 468-590, gnl|dasNov1|scaffold_96490 (5506-5361) | |
| 468-590, gnl|echTel1|scaffold_263700 (2851-2704) | |
| 468-590, gnl|echTel1|scaffold_263700 (2854-2716) | |
| 468-590, gnl|fr1|chrUn (103295593-103295746) | |
| 468-590, gnl|fr1|chrUn (103295589-103295729) | |
| 468-590, gnl|galGal2|chr21 (1922826-1922674) | |
| 468-590, gnl|galGal2|chr21 (1922830-1922692) | |
| 468-590, gnl|hg17|chr1 (1667424-1667578) | |
| 468-590, gnl|Hg17|chr1 (1667546-1667424) | |
| 468-590, gnl|hg17|chr1_random (1270606-1270750) | |
| 468-590, gnl|loxAfr1|scaffold_164054 (4417-4567) | |
| 468-590, gnl|loxAfr1|scaffold_164054 (4414-4553) | |
| 468-590, gnl|mm7|chr4 (154638378-154638223) | |
| 468-590, gnl|mm7|chr4 (154638382-154638237) | |
| 468-590, gnl|Mm7|chr4 (154638254-154638376) | |
| 468-590, gnl|monDom2|scaffold_196 (622423-622566) | |
| 468-590, gnl|oryCun1|scaffold_170691 (1172-1322) | |
| 468-590, gnl|oryCun1|scaffold_170691 (1168-1311) | |
| 468-590, gnl|panTro1|chr1 (1525740-1525893) | |
| 468-590, gnl|panTro1|chr1 (1525736-1525879) | |
| 468-590, gnl|rheMac2|chr1 (4699223-4699377) | |
| 468-590, gnl|rheMac2|chr1 (4699219-4699363) | |
| 468-590, gnl|rn3|chr5 (172495603-172495448) | |
| 468-590, gnl|rn3|chr5 (172495607-172495462) | |
| 468-590, gnl|tetNig1|chrUn_random (28242753-28242633) | |
| 468-590, gnl|tetNig1|chrUn_random (28242756-28242633) | |
| 468-590, gnl|xenTro1|scaffold_609 (499686-499527) | |
| 468-590, gnl|xenTro1|scaffold_609 (499690-499541) | |
| 736-929, gnl|bosTau2|chr16 (37687777-37687970) | |
| 736-929, gnl|Hg17|chr1 (1666873-1666680) | |
| 736-929, gnl|Mm7|chr4 (154638962-154639154) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nlu (0.383362) | |
| fce (0.271592) | |
| che (0.136314) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.383362) | |
| fce (0.271592) | |
| che (0.136314) | |
| med (0.116252) |