Non-Coding RNA Search

Ss1.1-Pig1-84C02.5

Sequence:


               
               CAAAGTGTAGGTTTTTTTTAAAGAACGGGCCTACGGGACGGTCTCCTGGCTCAGCAGCTC
TTCCCAGGCAAGTGCCTGCCAAGGCCGGAGTCCTGCTCCTGCCTGGCCTGGCCCCAGGCT
CAGCCAGCAGCTGCCAGCCCACGGAGGTAGTCCCCCACCAGCGGCAGCACTGCCCAGTCA
TCAGTCCGCAGGGCCACAGGCACACCGTCCGCCTGGGCTGCCTCCAGCCGCAGCAGCAAC
TTCGAGTTCGGGGGGAGACGGATGGCGACACAGTAGCTGGTGGGGGGTTGGGCCACCACC
ACAAAGGGCTCCAGGTGGCGGGACACCAAGGCCTCCAGCCCATGCGGCCCGAGAGGGCAC
CACAAGTGACTCTCGGCGCCCTTCGGCAGGCAGGAGTCCCAGAGCTCCTCAAAGAAGTCC
ACCTTGGCCCCCTCGGGGGGCTGGGGGAAAGGGAGAAAGAGGTCAGCGAAGTTCACGAGC
AGGGGAGGCAGGTGCGCGTGGCACGTGAGGCCCGCGGGTGTGGTGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGTGTAGGTTTTTTTTAAAGAACGGGCCTACGGGACGGTCTCCTGGCTCAGCAGCTC
TTCCCAGGCAAGTGCCTGCCAAGGCCGGAGTCCTGCTCCTGCCTGGCCTGGCCCCAGGCT
CAGCCAGCAGCTGCCAGCCCACGGAGGTAGTCCCCCACCAGCGGCAGCACTGCCCAGTCA
TCAGTCCGCAGGGCCACAGGCACACCGTCCGCCTGGGCTGCCTCCAGCCGCAGCAGCAAC
TTCGAGTTCGGGGGGAGACGGATGGCGACACAGTAGCTGGTGGGGGGTTGGGCCACCACC
ACAAAGGGCTCCAGGTGGCGGGACACCAAGGCCTCCAGCCCATGCGGCCCGAGAGGGCAC
CACAAGTGACTCTCGGCGCCCTTCGGCAGGCAGGAGTCCCAGAGCTCCTCAAAGAAGTCC
ACCTTGGCCCCCTCGGGGGGCTGGGGGAAAGGGAGAAAGAGGTCAGCGAAGTTCACGAGC
AGGGGAGGCAGGTGCGCGTGGCACGTGAGGCCCGCGGGTGTGGTGTAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               284-403, - strand, RNAz p=0.537127

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               284-403, - strand, RNAz p=0.537127

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               264-364, - strand, RNAmicro p=0.975542

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               264-364, - strand, RNAmicro p=0.975542

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               11-528, gnl|bosTau2|chr29 (38708649-38708128)
               

               
               11-528, gnl|Hg17|chr11 (65301822-65302311)
               

               
               11-528, gnl|Mm7|chr19 (5466046-5465585)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-528, gnl|bosTau2|chr29 (38708649-38708128)
               

               
               11-528, gnl|Hg17|chr11 (65301822-65302311)
               

               
               11-528, gnl|Mm7|chr19 (5466046-5465585)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

	11-528, gnl\|bosTau2\|chr29 (38708649-38708128)
	11-528, gnl\|Hg17\|chr11 (65301822-65302311)
	11-528, gnl\|Mm7\|chr19 (5466046-5465585)