Non-Coding RNA Search

Ss1.1-Pig1-84C14.5

Sequence:


               
               GCAGTGGCTTGGGTATCCTACCCGTCTGCGGTGGAGGAGTTGATGCCCCGACTCTTGCAA
ATGGAACACTGCGACTTGATAGAAAGTTTCAGTAGCAACGTACCTACCAAGAACTCCTTA
CGAATACCTGCGGCTGGTCCATTGAACGATTTGACCCTGAGCAGCTTTCAGGATGCCAGC
CTGCGCCAAAGCATGTTCCCCCACACTTCAGTGGCAACAGCAACAAGTGGCACAGTTTCC
AACTGTTCAGCAGTAAGTGTACTTTATCATTTAGTTAGTTTAAATGCCTCCCTCCCTTCC
TCCCATTTATTTCTGTTTTTAGACTGAGGTTGGAAAAATACAATTTAGGATTCTAATATA
TGAGATAAGAATATTCATGAATCAATTACCAAATTATTGTTATAACCCTTAGACATAATA
CAGTTTGAAACGTATTTTCCAAACTTTAGGATTGTTAGATTATGGTGCAGCAGTGATTTC
TTTTCAGTTATCCAGTCTCTAAAGATCATTTGTCTACCTTATTTTCCTTTAGAGTGTGAA
CAGACGTAGAAGTCACTGGAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTGGCTTGGGTATCCTACCCGTCTGCGGTGGAGGAGTTGATGCCCCGACTCTTGCAA
ATGGAACACTGCGACTTGATAGAAAGTTTCAGTAGCAACGTACCTACCAAGAACTCCTTA
CGAATACCTGCGGCTGGTCCATTGAACGATTTGACCCTGAGCAGCTTTCAGGATGCCAGC
CTGCGCCAAAGCATGTTCCCCCACACTTCAGTGGCAACAGCAACAAGTGGCACAGTTTCC
AACTGTTCAGCAGTAAGTGTACTTTATCATTTAGTTAGTTTAAATGCCTCCCTCCCTTCC
TCCCATTTATTTCTGTTTTTAGACTGAGGTTGGAAAAATACAATTTAGGATTCTAATATA
TGAGATAAGAATATTCATGAATCAATTACCAAATTATTGTTATAACCCTTAGACATAATA
CAGTTTGAAACGTATTTTCCAAACTTTAGGATTGTTAGATTATGGTGCAGCAGTGATTTC
TTTTCAGTTATCCAGTCTCTAAAGATCATTTGTCTACCTTATTTTCCTTTAGAGTGTGAA
CAGACGTAGAAGTCACTGGAAATC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               5-162, gnl|bosTau2|chr21 (32289000-32288845)
               

               
               5-162, gnl|Hg17|chr14 (38653295-38653451)
               

               
               5-162, gnl|Mm7|chr12 (56948559-56948715)
               


               
               163-564, gnl|bosTau2|chr21 (32287027-32286632)
               

               
               163-564, gnl|Hg17|chr14 (38656952-38657526)
               

               
               163-564, gnl|Mm7|chr12 (56951945-56952280)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-162, gnl|bosTau2|chr21 (32289000-32288845)
               

               
               5-162, gnl|Hg17|chr14 (38653295-38653451)
               

               
               5-162, gnl|Mm7|chr12 (56948559-56948715)
               


               
               163-564, gnl|bosTau2|chr21 (32287027-32286632)
               

               
               163-564, gnl|Hg17|chr14 (38656952-38657526)
               

               
               163-564, gnl|Mm7|chr12 (56951945-56952280)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ese (0.126502)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	5-162, gnl\|bosTau2\|chr21 (32289000-32288845)
	5-162, gnl\|Hg17\|chr14 (38653295-38653451)
	5-162, gnl\|Mm7\|chr12 (56948559-56948715)

	163-564, gnl\|bosTau2\|chr21 (32287027-32286632)
	163-564, gnl\|Hg17\|chr14 (38656952-38657526)
	163-564, gnl\|Mm7\|chr12 (56951945-56952280)