Non-Coding RNA Search

Ss1.1-Pig1-84C24.5

Sequence:


               
               GACCTGCCTCTATCACAAGACCTTGCACCCGCTGTGTCCCGTCTTCAACCTCGGCTACGT
GGTACAAGAGTCAGGCCAGAATTTCAGCACCTTGGCAGAGAAGGGTGGTGTGGTGGGCAT
CACCATCGACTGGAACTGTGACCTGGACTGGCACGTGCGACACTGCAAACCCGTCTACGA
GTTCCACGGGCTGTACGAGGAGAAAAAACTGTCTCCAGGCTTCAACTTCAGGTTTGCCAG
GCACTTCGTGGAGAACGGGACCAACCACCGGCACCTCTTCAAGGTGTTTGGGATTCGCTT
TGACATTCTGGTGGCCGGCAAGGCTGGGAAGTTCGACATCATCCCCACAATGACCACCAT
CGGCTCTGGCATTGGCATCTTCGGAGTGATTCCCTTGGCTCTGGCATTACCCACTGCCCT
CAGGCCACGGTTCTCTGTGACCTGCTGCTGCTCCACATCCTGCCCAGGCGGCACTACTAC
AAGCAGAAGAAGTTCAAGTACGCAGAGGACATGGGGCCGGGGCCGGGGGAGCATGACCCC
GCGGCCACCAGCTCCACCCTGGTTCTGCAGGAGAACATGAAGACATCCTGACCTCTGCCC
CTGACCCTGACTGGACGAAGCACGAGGCTTCCGGCGGAGGCCCCGGCAGGGTCCCGGCCA
GGGCAGAGGGGTCTCCCCGGGAGATCTCCCCCCTCAACCTTCAGCCAGGCAAACATCAGC
TTGCCGGGAGCTTTAGGTGGCCACTGTGAGAGGCCGGCATGAGTCAGGGCTCTGGGCTCC
AACTCTGCACCCCCAAGGGAGCCTAGCCCTGGCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTGCCTCTATCACAAGACCTTGCACCCGCTGTGTCCCGTCTTCAACCTCGGCTACGT
GGTACAAGAGTCAGGCCAGAATTTCAGCACCTTGGCAGAGAAGGGTGGTGTGGTGGGCAT
CACCATCGACTGGAACTGTGACCTGGACTGGCACGTGCGACACTGCAAACCCGTCTACGA
GTTCCACGGGCTGTACGAGGAGAAAAAACTGTCTCCAGGCTTCAACTTCAGGTTTGCCAG
GCACTTCGTGGAGAACGGGACCAACCACCGGCACCTCTTCAAGGTGTTTGGGATTCGCTT
TGACATTCTGGTGGCCGGCAAGGCTGGGAAGTTCGACATCATCCCCACAATGACCACCAT
CGGCTCTGGCATTGGCATCTTCGGAGTGATTCCCTTGGCTCTGGCATTACCCACTGCCCT
CAGGCCACGGTTCTCTGTGACCTGCTGCTGCTCCACATCCTGCCCAGGCGGCACTACTAC
AAGCAGAAGAAGTTCAAGTACGCAGAGGACATGGGGCCGGGGCCGGGGGAGCATGACCCC
GCGGCCACCAGCTCCACCCTGGTTCTGCAGGAGAACATGAAGACATCCTGACCTCTGCCC
CTGACCCTGACTGGACGAAGCACGAGGCTTCCGGCGGAGGCCCCGGCAGGGTCCCGGCCA
GGGCAGAGGGGTCTCCCCGGGAGATCTCCCCCCTCAACCTTCAGCCAGGCAAACATCAGC
TTGCCGGGAGCTTTAGGTGGCCACTGTGAGAGGCCGGCATGAGTCAGGGCTCTGGGCTCC
AACTCTGCACCCCCAAGGGAGCCTAGCCCTGGCCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|3421367|gb|AAC32187.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|3421367|gb|AAC32187.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               392-526, - strand, RNAz p=0.988615

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               392-526, - strand, RNAz p=0.988615

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               102-233, gnl|bosTau2|chr19 (19099486-19099355)
               

               
               102-233, gnl|canFam2|chr9 (51004197-51004351)
               

               
               102-233, gnl|dasNov1|scaffold_153692 (7253-7098)
               

               
               102-233, gnl|echTel1|scaffold_188593 (3447-3292)
               

               
               102-233, gnl|fr1|chrUn (262020356-262020207)
               

               
               102-233, gnl|galGal2|chr19 (3068925-3068768)
               

               
               102-233, gnl|hg17|chr17 (3749653-3749807)
               

               
               102-233, gnl|Hg17|chr17 (3749806-3749675)
               

               
               102-233, gnl|loxAfr1|scaffold_166234 (707-861)
               

               
               102-233, gnl|mm7|chr11 (73094171-73094026)
               

               
               102-233, gnl|Mm7|chr11 (73094025-73094156)
               

               
               102-233, gnl|monDom2|scaffold_248 (4706-4572)
               

               
               102-233, gnl|panTro1|chr19 (4049049-4049203)
               

               
               102-233, gnl|rheMac2|chr16 (3619279-3619433)
               

               
               102-233, gnl|rn3|chr10 (59916037-59915892)
               

               
               102-233, gnl|tetNig1|chr7 (1961517-1961348)
               


               
               392-526, gnl|bosTau2|chr19 (19098087-19097952)
               

               
               392-526, gnl|Hg17|chr17 (3748188-3748051)
               

               
               392-526, gnl|Mm7|chr11 (73095359-73095496)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-233, gnl|bosTau2|chr19 (19099486-19099355)
               

               
               102-233, gnl|canFam2|chr9 (51004197-51004351)
               

               
               102-233, gnl|dasNov1|scaffold_153692 (7253-7098)
               

               
               102-233, gnl|echTel1|scaffold_188593 (3447-3292)
               

               
               102-233, gnl|fr1|chrUn (262020356-262020207)
               

               
               102-233, gnl|galGal2|chr19 (3068925-3068768)
               

               
               102-233, gnl|hg17|chr17 (3749653-3749807)
               

               
               102-233, gnl|Hg17|chr17 (3749806-3749675)
               

               
               102-233, gnl|loxAfr1|scaffold_166234 (707-861)
               

               
               102-233, gnl|mm7|chr11 (73094171-73094026)
               

               
               102-233, gnl|Mm7|chr11 (73094025-73094156)
               

               
               102-233, gnl|monDom2|scaffold_248 (4706-4572)
               

               
               102-233, gnl|panTro1|chr19 (4049049-4049203)
               

               
               102-233, gnl|rheMac2|chr16 (3619279-3619433)
               

               
               102-233, gnl|rn3|chr10 (59916037-59915892)
               

               
               102-233, gnl|tetNig1|chr7 (1961517-1961348)
               


               
               392-526, gnl|bosTau2|chr19 (19098087-19097952)
               

               
               392-526, gnl|Hg17|chr17 (3748188-3748051)
               

               
               392-526, gnl|Mm7|chr11 (73095359-73095496)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               pla (0.133672)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               jej (0.0989218)

	102-233, gnl\|bosTau2\|chr19 (19099486-19099355)
	102-233, gnl\|canFam2\|chr9 (51004197-51004351)
	102-233, gnl\|dasNov1\|scaffold_153692 (7253-7098)
	102-233, gnl\|echTel1\|scaffold_188593 (3447-3292)
	102-233, gnl\|fr1\|chrUn (262020356-262020207)
	102-233, gnl\|galGal2\|chr19 (3068925-3068768)
	102-233, gnl\|hg17\|chr17 (3749653-3749807)
	102-233, gnl\|Hg17\|chr17 (3749806-3749675)
	102-233, gnl\|loxAfr1\|scaffold_166234 (707-861)
	102-233, gnl\|mm7\|chr11 (73094171-73094026)
	102-233, gnl\|Mm7\|chr11 (73094025-73094156)
	102-233, gnl\|monDom2\|scaffold_248 (4706-4572)
	102-233, gnl\|panTro1\|chr19 (4049049-4049203)
	102-233, gnl\|rheMac2\|chr16 (3619279-3619433)
	102-233, gnl\|rn3\|chr10 (59916037-59915892)
	102-233, gnl\|tetNig1\|chr7 (1961517-1961348)

	392-526, gnl\|bosTau2\|chr19 (19098087-19097952)
	392-526, gnl\|Hg17\|chr17 (3748188-3748051)
	392-526, gnl\|Mm7\|chr11 (73095359-73095496)