Non-Coding RNA Search

Ss1.1-Pig1-84D13.5

Sequence:


               
               CGCAGGGCGGGGCAGGCCCAACTTTTCGCTGCCTCCTGGTCTACCCTCCAGAACGGCCAT
GATTTCCCAGTTCTTCATTCTGTCCTCCAAGGGGGACCCGCTCATCTACGCCAGAGTCCG
TGTTCCAGGTCCCCCGACGCCATGGGCGCCCGATCCTTCCTGGCTCTCTTCCTCATCCTC
TTGCTGTTGGCATCCGAGGCCCAGGGGGCCCACGTGCCGCCGCAAGATGAGCCCGACAGC
CCGGCCCTGCTCACCAAGGTGCAGGAATCCCTCTACGGCTACTGGGATACAGCCAAGGCC
ACTGCCCAGGACCTGTACAGGAAGACTTACCTGCCCACCGTGGACGAGAAAATCAGGGAC
ATGTACAGCAAAAGCACGGCAGCTGTGACCATCTATGCAGGGATTTTCACTGATCAGGTC
CTTTCTCTACTGACTGGAGACCATTAAGAACTGGACCCCCAAGTGTGCGAGAGGGGCGAG
CCCTTGGCTCCCCTGATCTACTCCCCCTACTTCCTAGCAACTCAGCATCCTGCTCCCAAC
TCTCTGACCTGACTTCTTATCAATAATAAAAAAAAAATGCCCAGTTCAAAAAAAAAAAAA
TGGTTGCTTTGCTGAGACCTCAGGGGCCAAGATAGAGGGGCTGATGCTGTCATGCCATCC
AGCCAACATTTATTCAGCACCGCTTTTATGTATACAGCCCTAACCTGGTCAGCAGGAATA
AAGAGGTGATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGGGCGGGGCAGGCCCAACTTTTCGCTGCCTCCTGGTCTACCCTCCAGAACGGCCAT
GATTTCCCAGTTCTTCATTCTGTCCTCCAAGGGGGACCCGCTCATCTACGCCAGAGTCCG
TGTTCCAGGTCCCCCGACGCCATGGGCGCCCGATCCTTCCTGGCTCTCTTCCTCATCCTC
TTGCTGTTGGCATCCGAGGCCCAGGGGGCCCACGTGCCGCCGCAAGATGAGCCCGACAGC
CCGGCCCTGCTCACCAAGGTGCAGGAATCCCTCTACGGCTACTGGGATACAGCCAAGGCC
ACTGCCCAGGACCTGTACAGGAAGACTTACCTGCCCACCGTGGACGAGAAAATCAGGGAC
ATGTACAGCAAAAGCACGGCAGCTGTGACCATCTATGCAGGGATTTTCACTGATCAGGTC
CTTTCTCTACTGACTGGAGACCATTAAGAACTGGACCCCCAAGTGTGCGAGAGGGGCGAG
CCCTTGGCTCCCCTGATCTACTCCCCCTACTTCCTAGCAACTCAGCATCCTGCTCCCAAC
TCTCTGACCTGACTTCTTATCAATAATAAAAAAAAAATGCCCAGTTCAAAAAAAAAAAAA
TGGTTGCTTTGCTGAGACCTCAGGGGCCAAGATAGAGGGGCTGATGCTGTCATGCCATCC
AGCCAACATTTATTCAGCACCGCTTTTATGTATACAGCCCTAACCTGGTCAGCAGGAATA
AAGAGGTGATTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|108524|pir||S13187

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|108524|pir||S13187

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-109, gnl|bosTau2|chr25 (33184396-33184503)
               

               
               1-109, gnl|Hg17|chr7 (99343932-99344039)
               

               
               1-109, gnl|Mm7|chr5 (137117656-137117763)
               


               
               354-732, gnl|bosTau2|chr18 (38858615-38858242)
               

               
               354-732, gnl|Hg17|chr19 (50144253-50144636)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-109, gnl|bosTau2|chr25 (33184396-33184503)
               

               
               1-109, gnl|Hg17|chr7 (99343932-99344039)
               

               
               1-109, gnl|Mm7|chr5 (137117656-137117763)
               


               
               354-732, gnl|bosTau2|chr18 (38858615-38858242)
               

               
               354-732, gnl|Hg17|chr19 (50144253-50144636)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cli (5.80685)
               

               
               fli (2.63745)
               

               
               nje (2.32288)
               

               
               eli (1.66996)
               

               
               eje (0.197668)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (5.80685)
               

               
               fli (2.63745)
               

               
               nje (2.32288)
               

               
               eli (1.66996)
               

               
               eje (0.197668)
               

               
               jej (0.0989218)

	1-109, gnl\|bosTau2\|chr25 (33184396-33184503)
	1-109, gnl\|Hg17\|chr7 (99343932-99344039)
	1-109, gnl\|Mm7\|chr5 (137117656-137117763)

	354-732, gnl\|bosTau2\|chr18 (38858615-38858242)
	354-732, gnl\|Hg17\|chr19 (50144253-50144636)

	cli (5.80685)
	fli (2.63745)
	nje (2.32288)
	eli (1.66996)
	eje (0.197668)
	jej (0.0989218)