Non-Coding RNA Search

Ss1.1-Pig1-84E16.5

Sequence:


               
               AATGAGGTGGGCAGTGCCCAGTGCAATGTGACCCTGGAAGTGAGCACAGGCCCTGGGGCT
ACAGTGGTTGCTGGAGCTGTTGTGGGTACCCTAGTTGGACTGGGGCTGCTGGCTGGGTCA
GTCCTCTTGTACCACCACCGTGTCAAGGCCCTAGAGGAGCCAGCGAATGATATCAAGGAG
GACGCCGTCGCTCCCCGGACCCTACCCTGGCCCAAGGGCTCAGACACAATCTCCAAAAAT
GGAACCCTTTCCTCTGTTACTTCGGCGCGAGCCCTCCGGCCACCCCAAGGCCCTTCCAGG
CCTGGTGCACTGACCCCCACGTCCAGCCTCTCCAGTCAGGTCCTGCCTTCACCAAGGCTG
CCCAGGATGGATGGGGCCCACCCTCAGCCAATATCCCCCAGTCCTGGGGGGGTCTCATCC
TCTGCTCTGAGCCGCATGGGTGCTGTCCCTGTAATGGTGCCCGCCCAGAGTCAGGCTGGG
TCTCTGGTGTGATGGTTGAGCCACTCACTGGCTAAGCTATCTGGTTTCTCTTCTTCCTAC
AGGGGTCACCCCTAGCACAGAGGCCAGGGTCTTCGGAGAGTCTTCCAGACCTCTGGTCCT
CTGCCCCCGCCTTTATTTACTAAGGGAAAACTGAGTCTCAGTTAAGACCCAAACTTCCAG
GAGGTAGAAGGAGAAGGAGAAGCGGACCTGGGATTAGGAAGAGCCTCCACCCCCTCTTGG
GCCTCTCTAGGACTGCAGCGGGCTGCTGCTGAGATGGCAACCATCCCCACCCCCACCCCA
GGGCCTGGTAGGGACTGCCAGTCCACCAGTCCTCCGGGCCCCCTTGGTCTGTACCCAACC
GCATCTAACATCATCCTTCACTCCCATTCCAGCTCCCTGCATTAAGGTAACCTGTCCTGC
TGGCTTGGTTGGGTTTTGTTGGGGCAGGGGATAAGAAAGATATTTTTTAAACTAACTTGA
AATGCATGGTTTTGTTTTTATTTTGCAAATTTCAATAAAGATACGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGAGGTGGGCAGTGCCCAGTGCAATGTGACCCTGGAAGTGAGCACAGGCCCTGGGGCT
ACAGTGGTTGCTGGAGCTGTTGTGGGTACCCTAGTTGGACTGGGGCTGCTGGCTGGGTCA
GTCCTCTTGTACCACCACCGTGTCAAGGCCCTAGAGGAGCCAGCGAATGATATCAAGGAG
GACGCCGTCGCTCCCCGGACCCTACCCTGGCCCAAGGGCTCAGACACAATCTCCAAAAAT
GGAACCCTTTCCTCTGTTACTTCGGCGCGAGCCCTCCGGCCACCCCAAGGCCCTTCCAGG
CCTGGTGCACTGACCCCCACGTCCAGCCTCTCCAGTCAGGTCCTGCCTTCACCAAGGCTG
CCCAGGATGGATGGGGCCCACCCTCAGCCAATATCCCCCAGTCCTGGGGGGGTCTCATCC
TCTGCTCTGAGCCGCATGGGTGCTGTCCCTGTAATGGTGCCCGCCCAGAGTCAGGCTGGG
TCTCTGGTGTGATGGTTGAGCCACTCACTGGCTAAGCTATCTGGTTTCTCTTCTTCCTAC
AGGGGTCACCCCTAGCACAGAGGCCAGGGTCTTCGGAGAGTCTTCCAGACCTCTGGTCCT
CTGCCCCCGCCTTTATTTACTAAGGGAAAACTGAGTCTCAGTTAAGACCCAAACTTCCAG
GAGGTAGAAGGAGAAGGAGAAGCGGACCTGGGATTAGGAAGAGCCTCCACCCCCTCTTGG
GCCTCTCTAGGACTGCAGCGGGCTGCTGCTGAGATGGCAACCATCCCCACCCCCACCCCA
GGGCCTGGTAGGGACTGCCAGTCCACCAGTCCTCCGGGCCCCCTTGGTCTGTACCCAACC
GCATCTAACATCATCCTTCACTCCCATTCCAGCTCCCTGCATTAAGGTAACCTGTCCTGC
TGGCTTGGTTGGGTTTTGTTGGGGCAGGGGATAAGAAAGATATTTTTTAAACTAACTTGA
AATGCATGGTTTTGTTTTTATTTTGCAAATTTCAATAAAGATACGTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9664853|gb|AAF97236.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9664853|gb|AAF97236.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               294-452, - strand, RNAz p=0.630821
               

               
               642-750, - strand, RNAz p=0.956743
               

               
               867-984, + strand, RNAz p=0.734939

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               294-452, - strand, RNAz p=0.630821
               

               
               642-750, - strand, RNAz p=0.956743
               

               
               867-984, + strand, RNAz p=0.734939

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AY189281, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AY189281, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               177-1008, gnl|bosTau2|chr29 (20875675-20876492)
               

               
               177-1008, gnl|Hg17|chr11 (124129067-124128252)
               

               
               177-1008, gnl|Mm7|chr9 (37466082-37466919)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-1008, gnl|bosTau2|chr29 (20875675-20876492)
               

               
               177-1008, gnl|Hg17|chr11 (124129067-124128252)
               

               
               177-1008, gnl|Mm7|chr9 (37466082-37466919)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               elu (0.385356)
               

               
               cov (0.264306)
               

               
               cli (0.152812)
               

               
               cag (0.151194)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cov (0.264306)
               

               
               cli (0.152812)
               

               
               cag (0.151194)

	294-452, - strand, RNAz p=0.630821
	642-750, - strand, RNAz p=0.956743
	867-984, + strand, RNAz p=0.734939

	177-1008, gnl\|bosTau2\|chr29 (20875675-20876492)
	177-1008, gnl\|Hg17\|chr11 (124129067-124128252)
	177-1008, gnl\|Mm7\|chr9 (37466082-37466919)