Non-Coding RNA Search

Ss1.1-Pig1-84P13.5

Sequence:


               
               GGGACCAGAAGATGTAATTAGAGCTTGGATTTTGTTTCTCCAAGCTGTCTGTATGTTACT
TATATAAGTGGTCTCTTTTTTTCGTAGGTTGATACGTTTGTAATTTGATGTCATTTTTTA
GTTTCTCTCTTTTTATGTCCTTCTCTTCACTTCGACTTCTTTCAGTTGTACCTTCAGGAA
CACTGTTTAGAAACAGATGCTTAATTATTTGAGGATTTCTCAAACTGGCTATTTTATGAA
TTGCTTTTGTTTTAATCTTAACATATCCCTGTATTTACTAACATGGCAGTCAGGGGTGTG
GCGGGAATGCCTAGAAATAGCATGAACAAAATAGTGATTTCACTCTGTTGGGAAATATTT
CAATTTAATTGACTTTTGTCAAGTATGAAACTTAAATTCTTCCTTTTTACCAGAGAAGAG
TTGTTGGCAATAGCATTAATATTTTAAAAAGCTAGTGGGGGTGAATGTGGTGAAGCAGGA
GTGGGTGCTTTCAGTGACGCCCCTTGTTCAGGCTGCATGACTGGCGATTTTAGGGTACCC
TGAGTAGTGGGGAGAACATCACTCAAAGAAAATGTGAAGAGTCGGAGTTCTTGTCATGGC
TCGGCGGTAACGAGCCCAACTAGTATCCCTAAGGACTCAGGTTCGATCCCTGGCCTTAGT
GGGTTAAGGATCCGGCTTTGCCCTGAGCTATGGTGTAGGTCGCAGATGGGGCTTGGATCT
GTCGTGACTGTGGCTGTGGTGTAGGCCAGCAGCCATAGCTCTGATTAGAGCCCTACCTCG
GGAACCCATATGTCACAGGTACAGCCCTAAAAAGCAAAAAGAAAAAGAAGAAGAAATGGG
AAGAGTCATGTCGGCACAGATTTCAGCCTGGCGCAGTCCTTACTCACCCTTTCGTCCTTC
CACTGCTGGAACTGTCTAATTTTTATTTTCCTCATTCATATATTTGGTTATTCATATCTG
TTGAATATGAATTTATAAAATCACTTTAAACATCATTTTAAAATTAAGTGCTTGAGGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACCAGAAGATGTAATTAGAGCTTGGATTTTGTTTCTCCAAGCTGTCTGTATGTTACT
TATATAAGTGGTCTCTTTTTTTCGTAGGTTGATACGTTTGTAATTTGATGTCATTTTTTA
GTTTCTCTCTTTTTATGTCCTTCTCTTCACTTCGACTTCTTTCAGTTGTACCTTCAGGAA
CACTGTTTAGAAACAGATGCTTAATTATTTGAGGATTTCTCAAACTGGCTATTTTATGAA
TTGCTTTTGTTTTAATCTTAACATATCCCTGTATTTACTAACATGGCAGTCAGGGGTGTG
GCGGGAATGCCTAGAAATAGCATGAACAAAATAGTGATTTCACTCTGTTGGGAAATATTT
CAATTTAATTGACTTTTGTCAAGTATGAAACTTAAATTCTTCCTTTTTACCAGAGAAGAG
TTGTTGGCAATAGCATTAATATTTTAAAAAGCTAGTGGGGGTGAATGTGGTGAAGCAGGA
GTGGGTGCTTTCAGTGACGCCCCTTGTTCAGGCTGCATGACTGGCGATTTTAGGGTACCC
TGAGTAGTGGGGAGAACATCACTCAAAGAAAATGTGAAGAGTCGGAGTTCTTGTCATGGC
TCGGCGGTAACGAGCCCAACTAGTATCCCTAAGGACTCAGGTTCGATCCCTGGCCTTAGT
GGGTTAAGGATCCGGCTTTGCCCTGAGCTATGGTGTAGGTCGCAGATGGGGCTTGGATCT
GTCGTGACTGTGGCTGTGGTGTAGGCCAGCAGCCATAGCTCTGATTAGAGCCCTACCTCG
GGAACCCATATGTCACAGGTACAGCCCTAAAAAGCAAAAAGAAAAAGAAGAAGAAATGGG
AAGAGTCATGTCGGCACAGATTTCAGCCTGGCGCAGTCCTTACTCACCCTTTCGTCCTTC
CACTGCTGGAACTGTCTAATTTTTATTTTCCTCATTCATATATTTGGTTATTCATATCTG
TTGAATATGAATTTATAAAATCACTTTAAACATCATTTTAAAATTAAGTGCTTGAGGGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               493-583, - strand, RNAz p=0.872263

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               493-583, - strand, RNAz p=0.872263

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-583, gnl|bosTau2|chr29 (39376560-39377144)
               

               
               3-583, gnl|Hg17|chr11 (67705611-67704691)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-583, gnl|bosTau2|chr29 (39376560-39377144)
               

               
               3-583, gnl|Hg17|chr11 (67705611-67704691)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sug (0.127291)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)
               

               
               eep (0.122564)

	3-583, gnl\|bosTau2\|chr29 (39376560-39377144)
	3-583, gnl\|Hg17\|chr11 (67705611-67704691)