Non-Coding RNA Search

Ss1.1-Pig1-85I23.5

Sequence:


               
               GTGGGGGGCCCAAGCCTTCAGGGGTGTCCCCAGGCTCATCGGTTAGTGATGTGGATCAGG
AAGAGCCACGGTTTGGGGCCGTGGCCACTGTCAACCTGGCCACTGGAGAGGGGCTGCCTC
CCCTGGGCATGGCTGATGGGGCACTGGGGCCAGCAAGCCGGGAATCAACGCTGCGGCGTA
AAGCGGGCAGCTTGGCACTAGGTGAGCGCGAGGCCATGGAGGCAGAGGCAGAAGGCTATT
ATCGCAAGCTGCAGGCAGCCCGCAGGTTCAAGGACTGAGGGGTTGGGGGTGGGTATTGGG
GAGGGCAGTGCAGGTGGGTGGAGGGTGTGGGTGCCTTTTCCCCACTGGATAATAAAAGGG
GGTGCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGGGGGCCCAAGCCTTCAGGGGTGTCCCCAGGCTCATCGGTTAGTGATGTGGATCAGG
AAGAGCCACGGTTTGGGGCCGTGGCCACTGTCAACCTGGCCACTGGAGAGGGGCTGCCTC
CCCTGGGCATGGCTGATGGGGCACTGGGGCCAGCAAGCCGGGAATCAACGCTGCGGCGTA
AAGCGGGCAGCTTGGCACTAGGTGAGCGCGAGGCCATGGAGGCAGAGGCAGAAGGCTATT
ATCGCAAGCTGCAGGCAGCCCGCAGGTTCAAGGACTGAGGGGTTGGGGGTGGGTATTGGG
GAGGGCAGTGCAGGTGGGTGGAGGGTGTGGGTGCCTTTTCCCCACTGGATAATAAAAGGG
GGTGCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61813341|ref|XP_618127.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61813341|ref|XP_618127.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-161, + strand, RNAz p=0.907762

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-161, + strand, RNAz p=0.907762

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-305, gnl|bosTau2|chr7 (10606045-10606342)
               

               
               3-305, gnl|Hg17|chr19 (763839-763538)
               

               
               3-305, gnl|Mm7|chr10 (79645136-79644837)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-305, gnl|bosTau2|chr7 (10606045-10606342)
               

               
               3-305, gnl|Hg17|chr19 (763839-763538)
               

               
               3-305, gnl|Mm7|chr10 (79645136-79644837)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	3-305, gnl\|bosTau2\|chr7 (10606045-10606342)
	3-305, gnl\|Hg17\|chr19 (763839-763538)
	3-305, gnl\|Mm7\|chr10 (79645136-79644837)