Non-Coding RNA Search

Ss1.1-Pig1-85L07.5

Sequence:


               
               GTTGCGGGAGAGGATTTACTCCAACAACCAGTACGCCCGGCAGTTCATCATCTCCTGGAT
CCTGGTTCTGGAGTCCGTGCCAGACATTAACCTGCTGGATTATTTGCCGGAGATCCTGGA
TGGACTCTTCCAGATCCTGGGCGACAACGGCAAAGAGATTCGGAAAATGTGTGAGGTGGT
CCTTGGAGAATTCTTGAAAGAAATCAAGAAGAACCCCTCCAGTGTTAAGTTTGCTGAGAT
GGCCAACATCCTGGTGATCCACTGCCAGACCACGGATGACCTGATCCAGCTGACAGCCAT
GTGCTGGATGCGGGAGTTCATCCAGCTGGCCGGCCGGGTGATGCTGCCCTACTCTTCTGG
GATCCTGACCGCCGTCCTGCCCTGCCTGGCCTACGACGACCGCAAGAAAAGCATCAAGGA
GGTGGCCAACGTGTGCAACCAGAGCCTGATGAAGCTGGTCACCCCTGAGGACGATGAGCC
CGACGAGCCCAAGCCCGTGGTGCAGAAGCAGGCAGAAGCCAAGCCCGAAGACTCCTCGGC
GAAGCAGGAGGGGACAGCCAGTGGAGGGCCCGATGGTTCTTGTGACTCCAGCTTCGGTGG
CAGCATCGGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGCGGGAGAGGATTTACTCCAACAACCAGTACGCCCGGCAGTTCATCATCTCCTGGAT
CCTGGTTCTGGAGTCCGTGCCAGACATTAACCTGCTGGATTATTTGCCGGAGATCCTGGA
TGGACTCTTCCAGATCCTGGGCGACAACGGCAAAGAGATTCGGAAAATGTGTGAGGTGGT
CCTTGGAGAATTCTTGAAAGAAATCAAGAAGAACCCCTCCAGTGTTAAGTTTGCTGAGAT
GGCCAACATCCTGGTGATCCACTGCCAGACCACGGATGACCTGATCCAGCTGACAGCCAT
GTGCTGGATGCGGGAGTTCATCCAGCTGGCCGGCCGGGTGATGCTGCCCTACTCTTCTGG
GATCCTGACCGCCGTCCTGCCCTGCCTGGCCTACGACGACCGCAAGAAAAGCATCAAGGA
GGTGGCCAACGTGTGCAACCAGAGCCTGATGAAGCTGGTCACCCCTGAGGACGATGAGCC
CGACGAGCCCAAGCCCGTGGTGCAGAAGCAGGCAGAAGCCAAGCCCGAAGACTCCTCGGC
GAAGCAGGAGGGGACAGCCAGTGGAGGGCCCGATGGTTCTTGTGACTCCAGCTTCGGTGG
CAGCATCGGTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|1122441|gb|AAB03813.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|1122441|gb|AAB03813.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               162-279, + strand, RNAz p=0.771457
               

               
               447-564, - strand, RNAz p=0.577627

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-279, + strand, RNAz p=0.771457
               

               
               447-564, - strand, RNAz p=0.577627

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AK056433, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK056433, +

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               158-279, gnl|bosTau2|chr18 (488709-488830)
               

               
               158-279, gnl|Hg17|chr16 (69374555-69374433)
               

               
               158-279, gnl|Mm7|chr8 (109235543-109235665)
               


               
               412-564, gnl|bosTau2|chr18 (489991-490143)
               

               
               412-564, gnl|canFam2|chr5 (79724438-79724541)
               

               
               412-564, gnl|danRer3|chr25 (26625961-26625882)
               

               
               412-564, gnl|dasNov1|scaffold_67500 (261-359)
               

               
               412-564, gnl|fr1|chrUn (38746000-38746092)
               

               
               412-564, gnl|hg17|chr14 (28396596-28396696)
               

               
               412-564, gnl|Hg17|chr16 (69372342-69372193)
               

               
               412-564, gnl|mm7|chr12 (47480200-47480287)
               

               
               412-564, gnl|Mm7|chr8 (109237060-109237212)
               

               
               412-564, gnl|panTro1|chr15 (27346236-27346336)
               

               
               412-564, gnl|rheMac2|chr7 (91753726-91753827)
               

               
               412-564, gnl|rn3|chr6 (69318921-69319009)
               

               
               412-564, gnl|tetNig1|chr3 (11160144-11160238)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               158-279, gnl|bosTau2|chr18 (488709-488830)
               

               
               158-279, gnl|Hg17|chr16 (69374555-69374433)
               

               
               158-279, gnl|Mm7|chr8 (109235543-109235665)
               


               
               412-564, gnl|bosTau2|chr18 (489991-490143)
               

               
               412-564, gnl|canFam2|chr5 (79724438-79724541)
               

               
               412-564, gnl|danRer3|chr25 (26625961-26625882)
               

               
               412-564, gnl|dasNov1|scaffold_67500 (261-359)
               

               
               412-564, gnl|fr1|chrUn (38746000-38746092)
               

               
               412-564, gnl|hg17|chr14 (28396596-28396696)
               

               
               412-564, gnl|Hg17|chr16 (69372342-69372193)
               

               
               412-564, gnl|mm7|chr12 (47480200-47480287)
               

               
               412-564, gnl|Mm7|chr8 (109237060-109237212)
               

               
               412-564, gnl|panTro1|chr15 (27346236-27346336)
               

               
               412-564, gnl|rheMac2|chr7 (91753726-91753827)
               

               
               412-564, gnl|rn3|chr6 (69318921-69319009)
               

               
               412-564, gnl|tetNig1|chr3 (11160144-11160238)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nep (0.183925)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	162-279, + strand, RNAz p=0.771457
	447-564, - strand, RNAz p=0.577627

	158-279, gnl\|bosTau2\|chr18 (488709-488830)
	158-279, gnl\|Hg17\|chr16 (69374555-69374433)
	158-279, gnl\|Mm7\|chr8 (109235543-109235665)

	412-564, gnl\|bosTau2\|chr18 (489991-490143)
	412-564, gnl\|canFam2\|chr5 (79724438-79724541)
	412-564, gnl\|danRer3\|chr25 (26625961-26625882)
	412-564, gnl\|dasNov1\|scaffold_67500 (261-359)
	412-564, gnl\|fr1\|chrUn (38746000-38746092)
	412-564, gnl\|hg17\|chr14 (28396596-28396696)
	412-564, gnl\|Hg17\|chr16 (69372342-69372193)
	412-564, gnl\|mm7\|chr12 (47480200-47480287)
	412-564, gnl\|Mm7\|chr8 (109237060-109237212)
	412-564, gnl\|panTro1\|chr15 (27346236-27346336)
	412-564, gnl\|rheMac2\|chr7 (91753726-91753827)
	412-564, gnl\|rn3\|chr6 (69318921-69319009)
	412-564, gnl\|tetNig1\|chr3 (11160144-11160238)