Non-Coding RNA Search

Ss1.1-Pig1-85N19.5

Sequence:


               
               CAGCAATCCCTTTGATTCACATATGGTGACTCGTTCTTCCTTTTTATAGTACATTTTGGA
GAGGGACATCCACAACCACCAGCATGGTGCGGTCTTTCTTGGGGAGGGGGGATCCTGTGT
AAATAAAGGAAGAATCCGTTAAGGAAATTAATTTTAAAGTTACATTGCCTGGTTATACAA
AAGACTCTTGAACAACTTGGGTTCTTCTGGGACTGTTGAAACATGCTTGTTGAAGACAGA
ATGTACTGGGTGCCTCTCTCTGTACTCTGAACATGCATGTGTGTTGTGATGGGGGTGGGG
GAGTTGGGGGCCCTCACTTGGTCCTTCTCTGTTGTTTTTTCCAGGACAAANCCAAAGGCC
CCTTGTTAGCTGGCCGCCCCTGTCCCCATTTTTCCCCTGGTTCTTTCCCCATGGCCACAG
GAAATTGTGGTCCCCTGAATTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAATCCCTTTGATTCACATATGGTGACTCGTTCTTCCTTTTTATAGTACATTTTGGA
GAGGGACATCCACAACCACCAGCATGGTGCGGTCTTTCTTGGGGAGGGGGGATCCTGTGT
AAATAAAGGAAGAATCCGTTAAGGAAATTAATTTTAAAGTTACATTGCCTGGTTATACAA
AAGACTCTTGAACAACTTGGGTTCTTCTGGGACTGTTGAAACATGCTTGTTGAAGACAGA
ATGTACTGGGTGCCTCTCTCTGTACTCTGAACATGCATGTGTGTTGTGATGGGGGTGGGG
GAGTTGGGGGCCCTCACTTGGTCCTTCTCTGTTGTTTTTTCCAGGACAAANCCAAAGGCC
CCTTGTTAGCTGGCCGCCCCTGTCCCCATTTTTCCCCTGGTTCTTTCCCCATGGCCACAG
GAAATTGTGGTCCCCTGAATTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               277-394, - strand, RNAz p=0.981701

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-394, - strand, RNAz p=0.981701

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               290-387, + strand, RNAmicro p=0.94628

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               290-387, + strand, RNAmicro p=0.94628

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               311-393, DA523005 FEBRA2 Homo sapiens cDNA clone FEBRA2013641 5', mRNA 
(dbj|DA523005.1|), blast E-value=1e-22, identity=94.05% 
               

               
               311-393, DA652391 MESAN2 Homo sapiens cDNA clone MESAN2006783 5', mRNA 
(dbj|DA652391.1|), blast E-value=1e-22, identity=94.05% 
               

               
               311-393, DA678607 NHNPC2 Homo sapiens cDNA clone NHNPC2000585 5', mRNA 
(dbj|DA678607.1|), blast E-value=1e-22, identity=94.05% 
               

               
               311-393, UI-H-ED0-awz-i-21-0-UI.s1 NCI_CGAP_ED0 Homo sapiens cDNA clone 
(gb|BM995111.1|), blast E-value=9e-27, identity=95.18% 
               

               
               311-387, GL-Cf-1633 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN744841.1|), blast E-value=2e-24, identity=93.51% 
               

               
               311-387, nae30d11.x1 Dog eye eye minus lens and cornea. Unnormalized (nae) 
(gb|DN879895.1|), blast E-value=6e-28, identity=96.1%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               311-393, DA523005 FEBRA2 Homo sapiens cDNA clone FEBRA2013641 5', mRNA 
(dbj|DA523005.1|), blast E-value=1e-22, identity=94.05% 
               

               
               311-393, DA652391 MESAN2 Homo sapiens cDNA clone MESAN2006783 5', mRNA 
(dbj|DA652391.1|), blast E-value=1e-22, identity=94.05% 
               

               
               311-393, DA678607 NHNPC2 Homo sapiens cDNA clone NHNPC2000585 5', mRNA 
(dbj|DA678607.1|), blast E-value=1e-22, identity=94.05% 
               

               
               311-393, UI-H-ED0-awz-i-21-0-UI.s1 NCI_CGAP_ED0 Homo sapiens cDNA clone 
(gb|BM995111.1|), blast E-value=9e-27, identity=95.18% 
               

               
               311-387, GL-Cf-1633 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN744841.1|), blast E-value=2e-24, identity=93.51% 
               

               
               311-387, nae30d11.x1 Dog eye eye minus lens and cornea. Unnormalized (nae) 
(gb|DN879895.1|), blast E-value=6e-28, identity=96.1%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               80-444, gnl|bosTau2|chr22 (39207565-39207213)
               

               
               80-444, gnl|Hg17|chr3 (48706945-48706580)
               

               
               80-444, gnl|Mm7|chr9 (108507143-108507488)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-444, gnl|bosTau2|chr22 (39207565-39207213)
               

               
               80-444, gnl|Hg17|chr3 (48706945-48706580)
               

               
               80-444, gnl|Mm7|chr9 (108507143-108507488)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	311-393, DA523005 FEBRA2 Homo sapiens cDNA clone FEBRA2013641 5', mRNA (dbj\|DA523005.1\|), blast E-value=1e-22, identity=94.05%
	311-393, DA652391 MESAN2 Homo sapiens cDNA clone MESAN2006783 5', mRNA (dbj\|DA652391.1\|), blast E-value=1e-22, identity=94.05%
	311-393, DA678607 NHNPC2 Homo sapiens cDNA clone NHNPC2000585 5', mRNA (dbj\|DA678607.1\|), blast E-value=1e-22, identity=94.05%
	311-393, UI-H-ED0-awz-i-21-0-UI.s1 NCI_CGAP_ED0 Homo sapiens cDNA clone (gb\|BM995111.1\|), blast E-value=9e-27, identity=95.18%
	311-387, GL-Cf-1633 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue (gb\|DN744841.1\|), blast E-value=2e-24, identity=93.51%
	311-387, nae30d11.x1 Dog eye eye minus lens and cornea. Unnormalized (nae) (gb\|DN879895.1\|), blast E-value=6e-28, identity=96.1%

	80-444, gnl\|bosTau2\|chr22 (39207565-39207213)
	80-444, gnl\|Hg17\|chr3 (48706945-48706580)
	80-444, gnl\|Mm7\|chr9 (108507143-108507488)