Ss1.1-Pig1-86K03.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAAACCGAAAGGAAATGACAGCAGCTTGTATCCCCCGGAGAAGGATCATTAACCTCAC AAGTGTTCTGACTCTCCAGGAAGAAATCAATGAGCGGGGACATGAGACTCTCCGGGAGAT GCTACATAACCATTCCTTTGTGGGCTGTGTGAATCCTCAGTGGGCCTTGGCACAGCATCA GACCAAGTTATACCTTCTGAACACCACCAAACTTAGTGAAGAGCTGTTCTACCAGATTCT CATTTACGATTTTGCCAATTTTGGTGTTCTGAGGTTATCGGAGCCAGCACCGCTCTTTGA CCTCGCCATGCTGGCTTTGGATAGCCCCGAGAGCGGCTGGACAGAGGAAGATGGTCCCAA AGAAGGACTTGCCGAATACATTGTTGAGTTTCTGAAAAAGAAAGCTGAGATGCTTGCAGA CTACTTCTCCTTGGAGATTGATGAGGAAGGGAACCTGGTTGGCTTACCTCTTCTGATCGA CAATTACGTGCCTCCCTTGGAGGGTCTGCCTATCTTCATTCTCCGCCTGGCCACTGAGGT GAACTGGGATGAAGAAAAGGAATGTTTTGAAAGCCTCAGTAAAGAATGTGCTATGTTTTA CTCTATCCGGAAGCAGTACATATCTGAGGAGTCGACCCTCTCAGGCCAGCAGAGCGAAGC GCCCGGCTCCACTCCAAACCCCTGGAAGTGGACCGTGGAGCATGTCGTTTATAAAGCCTT CCGCTCATACCTTCTGCCTCCCAAATGTTTCACAGAAGATGGAAACATCTTGCAGCTTGC CAACCTGCCCGACCTATACAAAGTCTTCGAGAGGTGTTAAATATGGTCGCTCATGGATTC TGGGATGGGCCGTTCTTCCTTGTATCCTGACGTTTGTAGGTGGAAGACTCGTGTTTGCCT TCTAACCAGTAGCACTCCTTCATGCATGGTGGACTGACTGTAAATAAATAGATGTGTCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAAACCGAAAGGAAATGACAGCAGCTTGTATCCCCCGGAGAAGGATCATTAACCTCAC AAGTGTTCTGACTCTCCAGGAAGAAATCAATGAGCGGGGACATGAGACTCTCCGGGAGAT GCTACATAACCATTCCTTTGTGGGCTGTGTGAATCCTCAGTGGGCCTTGGCACAGCATCA GACCAAGTTATACCTTCTGAACACCACCAAACTTAGTGAAGAGCTGTTCTACCAGATTCT CATTTACGATTTTGCCAATTTTGGTGTTCTGAGGTTATCGGAGCCAGCACCGCTCTTTGA CCTCGCCATGCTGGCTTTGGATAGCCCCGAGAGCGGCTGGACAGAGGAAGATGGTCCCAA AGAAGGACTTGCCGAATACATTGTTGAGTTTCTGAAAAAGAAAGCTGAGATGCTTGCAGA CTACTTCTCCTTGGAGATTGATGAGGAAGGGAACCTGGTTGGCTTACCTCTTCTGATCGA CAATTACGTGCCTCCCTTGGAGGGTCTGCCTATCTTCATTCTCCGCCTGGCCACTGAGGT GAACTGGGATGAAGAAAAGGAATGTTTTGAAAGCCTCAGTAAAGAATGTGCTATGTTTTA CTCTATCCGGAAGCAGTACATATCTGAGGAGTCGACCCTCTCAGGCCAGCAGAGCGAAGC GCCCGGCTCCACTCCAAACCCCTGGAAGTGGACCGTGGAGCATGTCGTTTATAAAGCCTT CCGCTCATACCTTCTGCCTCCCAAATGTTTCACAGAAGATGGAAACATCTTGCAGCTTGC CAACCTGCCCGACCTATACAAAGTCTTCGAGAGGTGTTAAATATGGTCGCTCATGGATTC TGGGATGGGCCGTTCTTCCTTGTATCCTGACGTTTGTAGGTGGAAGACTCGTGTTTGCCT TCTAACCAGTAGCACTCCTTCATGCATGGTGGACTGACTGTAAATAAATAGATGTGTCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 650-768, + strand, RNAz p=0.637473 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 650-768, + strand, RNAz p=0.637473 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-107, gnl|bosTau2|chr22 (8101179-8101285) | |
| 1-107, gnl|canFam2|chr23 (9926998-9927183) | |
| 1-107, gnl|dasNov1|scaffold_83809 (40216-40031) | |
| 1-107, gnl|echTel1|scaffold_324029 (117975-117794) | |
| 1-107, gnl|galGal2|chr2 (45124291-45124473) | |
| 1-107, gnl|hg17|chr3 (37045260-37045444) | |
| 1-107, gnl|Hg17|chr3 (37045321-37045427) | |
| 1-107, gnl|loxAfr1|scaffold_85293 (12213-12398) | |
| 1-107, gnl|mm7|chr9 (110937594-110937410) | |
| 1-107, gnl|Mm7|chr9 (110937531-110937425) | |
| 1-107, gnl|monDom2|scaffold_128 (1982680-1982515) | |
| 1-107, gnl|oryCun1|scaffold_148446 (6278-6094) | |
| 1-107, gnl|panTro1|chr2 (38151404-38151588) | |
| 1-107, gnl|rheMac2|chr2 (99528299-99528115) | |
| 1-107, gnl|rn3|chr8 (115647692-115647508) | |
| 1-107, gnl|xenTro1|scaffold_26 (3428621-3428799) | |
| 108-216, gnl|bosTau2|chr22 (8158658-8158766) | |
| 108-216, gnl|canFam2|chr23 (9934266-9934392) | |
| 108-216, gnl|danRer3|chr13 (43053759-43053879) | |
| 108-216, gnl|dasNov1|scaffold_68538 (3475-3601) | |
| 108-216, gnl|echTel1|scaffold_290244 (834-964) | |
| 108-216, gnl|fr1|chrUn (200059336-200059455) | |
| 108-216, gnl|galGal2|chr2 (45126055-45126182) | |
| 108-216, gnl|hg17|chr3 (37056675-37056802) | |
| 108-216, gnl|Hg17|chr3 (37056681-37056789) | |
| 108-216, gnl|loxAfr1|scaffold_15340 (7476-7603) | |
| 108-216, gnl|mm7|chr9 (110933725-110933601) | |
| 108-216, gnl|Mm7|chr9 (110933717-110933609) | |
| 108-216, gnl|monDom2|scaffold_128 (1981796-1981677) | |
| 108-216, gnl|panTro1|chr2 (38162848-38162975) | |
| 108-216, gnl|rheMac2|chr2 (99516462-99516336) | |
| 108-216, gnl|rn3|chr8 (115642396-115642272) | |
| 108-216, gnl|tetNig1|chr17 (1025143-1025260) | |
| 108-216, gnl|xenTro1|scaffold_26 (3429309-3429426) | |
| 280-446, gnl|bosTau2|chr22 (8163663-8163829) | |
| 280-446, gnl|canFam2|chr23 (9946786-9946954) | |
| 280-446, gnl|danRer3|chr13 (43054872-43055040) | |
| 280-446, gnl|echTel1|scaffold_290244 (11274-11442) | |
| 280-446, gnl|fr1|chrUn (200059668-200059836) | |
| 280-446, gnl|galGal2|chr2 (45126859-45127027) | |
| 280-446, gnl|hg17|chr3 (37064013-37064181) | |
| 280-446, gnl|Hg17|chr3 (37064013-37064179) | |
| 280-446, gnl|loxAfr1|scaffold_15340 (14049-14217) | |
| 280-446, gnl|mm7|chr9 (110928770-110928511) | |
| 280-446, gnl|Mm7|chr9 (110928768-110928602) | |
| 280-446, gnl|monDom2|scaffold_128 (1981234-1981066) | |
| 280-446, gnl|oryCun1|scaffold_157469 (6128-5960) | |
| 280-446, gnl|panTro1|chr2 (38170272-38170440) | |
| 280-446, gnl|rn3|chr8 (115638499-115638331) | |
| 280-446, gnl|tetNig1|chr17 (1025806-1025973) | |
| 280-446, gnl|xenTro1|scaffold_26 (3432178-3432346) | |
| 650-951, gnl|bosTau2|chr22 (8165808-8166116) | |
| 650-951, gnl|Hg17|chr3 (37066978-37067325) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-107, gnl|bosTau2|chr22 (8101179-8101285) | |
| 1-107, gnl|canFam2|chr23 (9926998-9927183) | |
| 1-107, gnl|dasNov1|scaffold_83809 (40216-40031) | |
| 1-107, gnl|echTel1|scaffold_324029 (117975-117794) | |
| 1-107, gnl|galGal2|chr2 (45124291-45124473) | |
| 1-107, gnl|hg17|chr3 (37045260-37045444) | |
| 1-107, gnl|Hg17|chr3 (37045321-37045427) | |
| 1-107, gnl|loxAfr1|scaffold_85293 (12213-12398) | |
| 1-107, gnl|mm7|chr9 (110937594-110937410) | |
| 1-107, gnl|Mm7|chr9 (110937531-110937425) | |
| 1-107, gnl|monDom2|scaffold_128 (1982680-1982515) | |
| 1-107, gnl|oryCun1|scaffold_148446 (6278-6094) | |
| 1-107, gnl|panTro1|chr2 (38151404-38151588) | |
| 1-107, gnl|rheMac2|chr2 (99528299-99528115) | |
| 1-107, gnl|rn3|chr8 (115647692-115647508) | |
| 1-107, gnl|xenTro1|scaffold_26 (3428621-3428799) | |
| 108-216, gnl|bosTau2|chr22 (8158658-8158766) | |
| 108-216, gnl|canFam2|chr23 (9934266-9934392) | |
| 108-216, gnl|danRer3|chr13 (43053759-43053879) | |
| 108-216, gnl|dasNov1|scaffold_68538 (3475-3601) | |
| 108-216, gnl|echTel1|scaffold_290244 (834-964) | |
| 108-216, gnl|fr1|chrUn (200059336-200059455) | |
| 108-216, gnl|galGal2|chr2 (45126055-45126182) | |
| 108-216, gnl|hg17|chr3 (37056675-37056802) | |
| 108-216, gnl|Hg17|chr3 (37056681-37056789) | |
| 108-216, gnl|loxAfr1|scaffold_15340 (7476-7603) | |
| 108-216, gnl|mm7|chr9 (110933725-110933601) | |
| 108-216, gnl|Mm7|chr9 (110933717-110933609) | |
| 108-216, gnl|monDom2|scaffold_128 (1981796-1981677) | |
| 108-216, gnl|panTro1|chr2 (38162848-38162975) | |
| 108-216, gnl|rheMac2|chr2 (99516462-99516336) | |
| 108-216, gnl|rn3|chr8 (115642396-115642272) | |
| 108-216, gnl|tetNig1|chr17 (1025143-1025260) | |
| 108-216, gnl|xenTro1|scaffold_26 (3429309-3429426) | |
| 280-446, gnl|bosTau2|chr22 (8163663-8163829) | |
| 280-446, gnl|canFam2|chr23 (9946786-9946954) | |
| 280-446, gnl|danRer3|chr13 (43054872-43055040) | |
| 280-446, gnl|echTel1|scaffold_290244 (11274-11442) | |
| 280-446, gnl|fr1|chrUn (200059668-200059836) | |
| 280-446, gnl|galGal2|chr2 (45126859-45127027) | |
| 280-446, gnl|hg17|chr3 (37064013-37064181) | |
| 280-446, gnl|Hg17|chr3 (37064013-37064179) | |
| 280-446, gnl|loxAfr1|scaffold_15340 (14049-14217) | |
| 280-446, gnl|mm7|chr9 (110928770-110928511) | |
| 280-446, gnl|Mm7|chr9 (110928768-110928602) | |
| 280-446, gnl|monDom2|scaffold_128 (1981234-1981066) | |
| 280-446, gnl|oryCun1|scaffold_157469 (6128-5960) | |
| 280-446, gnl|panTro1|chr2 (38170272-38170440) | |
| 280-446, gnl|rn3|chr8 (115638499-115638331) | |
| 280-446, gnl|tetNig1|chr17 (1025806-1025973) | |
| 280-446, gnl|xenTro1|scaffold_26 (3432178-3432346) | |
| 650-951, gnl|bosTau2|chr22 (8165808-8166116) | |
| 650-951, gnl|Hg17|chr3 (37066978-37067325) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| rec (0.17307) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.17307) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| eje (0.0988338) |