Non-Coding RNA Search

Ss1.1-Pig1-87A10.5

Sequence:


               
               GCAGGATCCCTGAAGGTCCCTGCCCCCACCTCCCGCCCCAAACACCGGCCCAGCCCCAGC
AGCCGTGAACCCCTGCTCAGCAGCTCTGAGAATGGCAACGGCGGCCGAGAGATGCCCCCA
GCTGACGGCCGGATGGAGAGGATCTTCACTGCCCTCCTGCCCTTCTGCAGACCAGGCCCT
GAGGGCCAGCTTGCCGCCAAGGCCCTTCAGAAAGTGCTGTCCCTGAAGCAGCTCCTGTTT
CCCCTGGAGGAAGACAGCAGGACGGGGCCTCCCCTCGAAGGGGATGGGGTCCCAGGAGGC
AGCCCCCTTAGCCCAGCACAGATTCAGGAAATTCGGGAGGAGCTACTCAACCTGGAGGAG
ACCATTAAACATCTGGAGGAGGTGGAGGAGGAGTTTTGCCGCCTGAGACTCCTCCTGTCT
CAGCTCGGGGAGAACACTGTCCCCCAGCCTGGCTGTACCTGAGGCCCCTGCCCCAGGCAG
GCCTTTCGCAAGGAGAGAGCGTGAGGGCTGCCCACCACTGCACAGCTGCCACAGCATCTC
CGACCCCAAGGGCCTGAGGAGGGGGGACCCAGCTGCCGGGGCCGCGCCTGGGGGGGCATG
GCTGAGATCGCTGCCCCCCACCTCCCACCGGCCTCCCCTCCCTCCTGCTTGGGGGACTCA
GGGCTTTGTTCCGGGGGACACCACCTGGCCCCATCCCTGGGCCATCTCAGTATTGCCTGG
GGGGCCCACCCCTCCATCCCCCACCCCCAAGTGCCTTTGCTCTGTTTTTATACCTGGAAT
TGGAGGTTTATTTTTTAATATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGATCCCTGAAGGTCCCTGCCCCCACCTCCCGCCCCAAACACCGGCCCAGCCCCAGC
AGCCGTGAACCCCTGCTCAGCAGCTCTGAGAATGGCAACGGCGGCCGAGAGATGCCCCCA
GCTGACGGCCGGATGGAGAGGATCTTCACTGCCCTCCTGCCCTTCTGCAGACCAGGCCCT
GAGGGCCAGCTTGCCGCCAAGGCCCTTCAGAAAGTGCTGTCCCTGAAGCAGCTCCTGTTT
CCCCTGGAGGAAGACAGCAGGACGGGGCCTCCCCTCGAAGGGGATGGGGTCCCAGGAGGC
AGCCCCCTTAGCCCAGCACAGATTCAGGAAATTCGGGAGGAGCTACTCAACCTGGAGGAG
ACCATTAAACATCTGGAGGAGGTGGAGGAGGAGTTTTGCCGCCTGAGACTCCTCCTGTCT
CAGCTCGGGGAGAACACTGTCCCCCAGCCTGGCTGTACCTGAGGCCCCTGCCCCAGGCAG
GCCTTTCGCAAGGAGAGAGCGTGAGGGCTGCCCACCACTGCACAGCTGCCACAGCATCTC
CGACCCCAAGGGCCTGAGGAGGGGGGACCCAGCTGCCGGGGCCGCGCCTGGGGGGGCATG
GCTGAGATCGCTGCCCCCCACCTCCCACCGGCCTCCCCTCCCTCCTGCTTGGGGGACTCA
GGGCTTTGTTCCGGGGGACACCACCTGGCCCCATCCCTGGGCCATCTCAGTATTGCCTGG
GGGGCCCACCCCTCCATCCCCCACCCCCAAGTGCCTTTGCTCTGTTTTTATACCTGGAAT
TGGAGGTTTATTTTTTAATATATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               265-384, + strand, RNAz p=0.656485

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               265-384, + strand, RNAz p=0.656485

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               213-384, gnl|bosTau2|chr18 (44659367-44659538)
               

               
               213-384, gnl|Hg17|chr19 (47102447-47102618)
               

               
               213-384, gnl|Mm7|chr7 (21715270-21715439)
               


               
               465-754, gnl|bosTau2|chr18 (44659964-44660281)
               

               
               465-754, gnl|Hg17|chr19 (47103080-47103662)
               

               
               465-754, gnl|Mm7|chr7 (21715715-21716018)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               213-384, gnl|bosTau2|chr18 (44659367-44659538)
               

               
               213-384, gnl|Hg17|chr19 (47102447-47102618)
               

               
               213-384, gnl|Mm7|chr7 (21715270-21715439)
               


               
               465-754, gnl|bosTau2|chr18 (44659964-44660281)
               

               
               465-754, gnl|Hg17|chr19 (47103080-47103662)
               

               
               465-754, gnl|Mm7|chr7 (21715715-21716018)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.136874)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               ese (0.126502)

	213-384, gnl\|bosTau2\|chr18 (44659367-44659538)
	213-384, gnl\|Hg17\|chr19 (47102447-47102618)
	213-384, gnl\|Mm7\|chr7 (21715270-21715439)

	465-754, gnl\|bosTau2\|chr18 (44659964-44660281)
	465-754, gnl\|Hg17\|chr19 (47103080-47103662)
	465-754, gnl\|Mm7\|chr7 (21715715-21716018)