Non-Coding RNA Search

Ss1.1-Pig1-87E03.5

Sequence:


               
               ATTCGCACGAGGGAAAAAGGAGATTTCATTACTTCACCTGAAATAAGTCAGATCTTTGGG
GAGCTCCTAGGGATATGGTTCATCAGTGAATGGATAGCCACTGGGAAAAATGCAGCGTTC
CAACTGGTGGAACTGGGCCCAGGCAGGGGAACCCTCTCAGGAGATATTTTGAGGGTGTTC
AGTCAGCTTGGATCTGTGCTGAAAAACTGTGACATTTCAATACATCTGGTAGAGGTGAGC
CAAAAATTAAGTGAGATTCAAGCATTAACACTGACTGAAGAGAAGGTCCCGTTAGAGCGA
GAAGCTGGATCCCCAGTATACATGAAAGGTGTCACGAAGTCTGGAATTCCAATTTCCTGG
TACCGAGATCTGCAAGATGTTCCAAAAGGGTACAGCTTTTATCTTGCGCATGAATTTTTT
GACGTTCTTCCTGTGCATAAGTTTCAGAAAACACCACAAGGATGGCGAGAAGTGCTCATT
GATATTGATCCACAAGTTTCTGATAAACTGAGATTTGTTTTGGCGCCTTGTGCCACCCCG
GCAGAAGCCTTCATACAAAAGGATGAAACAAGGGATCACGTGGAAGTATGTCCTGATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCGCACGAGGGAAAAAGGAGATTTCATTACTTCACCTGAAATAAGTCAGATCTTTGGG
GAGCTCCTAGGGATATGGTTCATCAGTGAATGGATAGCCACTGGGAAAAATGCAGCGTTC
CAACTGGTGGAACTGGGCCCAGGCAGGGGAACCCTCTCAGGAGATATTTTGAGGGTGTTC
AGTCAGCTTGGATCTGTGCTGAAAAACTGTGACATTTCAATACATCTGGTAGAGGTGAGC
CAAAAATTAAGTGAGATTCAAGCATTAACACTGACTGAAGAGAAGGTCCCGTTAGAGCGA
GAAGCTGGATCCCCAGTATACATGAAAGGTGTCACGAAGTCTGGAATTCCAATTTCCTGG
TACCGAGATCTGCAAGATGTTCCAAAAGGGTACAGCTTTTATCTTGCGCATGAATTTTTT
GACGTTCTTCCTGTGCATAAGTTTCAGAAAACACCACAAGGATGGCGAGAAGTGCTCATT
GATATTGATCCACAAGTTTCTGATAAACTGAGATTTGTTTTGGCGCCTTGTGCCACCCCG
GCAGAAGCCTTCATACAAAAGGATGAAACAAGGGATCACGTGGAAGTATGTCCTGATGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26354925|dbj|BAC41089.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26354925|dbj|BAC41089.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               165-284, + strand, RNAz p=0.931112

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-284, + strand, RNAz p=0.931112

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC004548, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC004548, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               165-406, gnl|bosTau2|chr11 (18830448-18830687)
               

               
               165-406, gnl|canFam2|chr17 (32700137-32700327)
               

               
               165-406, gnl|echTel1|scaffold_317676 (30151-30341)
               

               
               165-406, gnl|fr1|chrUn (176216890-176216711)
               

               
               165-406, gnl|galGal2|chr3 (29821877-29822058)
               

               
               165-406, gnl|hg17|chr2 (37380350-37380540)
               

               
               165-406, gnl|Hg17|chr2 (37380363-37380603)
               

               
               165-406, gnl|mm7|chr17 (77242597-77242791)
               

               
               165-406, gnl|Mm7|chr17 (77242615-77242852)
               

               
               165-406, gnl|monDom2|scaffold_23 (39919200-39919389)
               

               
               165-406, gnl|oryCun1|scaffold_98331 (1778-1968)
               

               
               165-406, gnl|panTro1|chr12 (38845220-38845410)
               

               
               165-406, gnl|rheMac2|chr13 (37223058-37223248)
               

               
               165-406, gnl|rn3|chr6 (1720735-1720922)
               

               
               165-406, gnl|xenTro1|scaffold_1221 (15928-16119)
               


               
               443-558, gnl|bosTau2|chr11 (18832484-18832599)
               

               
               443-558, gnl|Hg17|chr2 (37382652-37382767)
               

               
               443-558, gnl|Mm7|chr17 (77244383-77244498)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               165-406, gnl|bosTau2|chr11 (18830448-18830687)
               

               
               165-406, gnl|canFam2|chr17 (32700137-32700327)
               

               
               165-406, gnl|echTel1|scaffold_317676 (30151-30341)
               

               
               165-406, gnl|fr1|chrUn (176216890-176216711)
               

               
               165-406, gnl|galGal2|chr3 (29821877-29822058)
               

               
               165-406, gnl|hg17|chr2 (37380350-37380540)
               

               
               165-406, gnl|Hg17|chr2 (37380363-37380603)
               

               
               165-406, gnl|mm7|chr17 (77242597-77242791)
               

               
               165-406, gnl|Mm7|chr17 (77242615-77242852)
               

               
               165-406, gnl|monDom2|scaffold_23 (39919200-39919389)
               

               
               165-406, gnl|oryCun1|scaffold_98331 (1778-1968)
               

               
               165-406, gnl|panTro1|chr12 (38845220-38845410)
               

               
               165-406, gnl|rheMac2|chr13 (37223058-37223248)
               

               
               165-406, gnl|rn3|chr6 (1720735-1720922)
               

               
               165-406, gnl|xenTro1|scaffold_1221 (15928-16119)
               


               
               443-558, gnl|bosTau2|chr11 (18832484-18832599)
               

               
               443-558, gnl|Hg17|chr2 (37382652-37382767)
               

               
               443-558, gnl|Mm7|chr17 (77244383-77244498)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	165-406, gnl\|bosTau2\|chr11 (18830448-18830687)
	165-406, gnl\|canFam2\|chr17 (32700137-32700327)
	165-406, gnl\|echTel1\|scaffold_317676 (30151-30341)
	165-406, gnl\|fr1\|chrUn (176216890-176216711)
	165-406, gnl\|galGal2\|chr3 (29821877-29822058)
	165-406, gnl\|hg17\|chr2 (37380350-37380540)
	165-406, gnl\|Hg17\|chr2 (37380363-37380603)
	165-406, gnl\|mm7\|chr17 (77242597-77242791)
	165-406, gnl\|Mm7\|chr17 (77242615-77242852)
	165-406, gnl\|monDom2\|scaffold_23 (39919200-39919389)
	165-406, gnl\|oryCun1\|scaffold_98331 (1778-1968)
	165-406, gnl\|panTro1\|chr12 (38845220-38845410)
	165-406, gnl\|rheMac2\|chr13 (37223058-37223248)
	165-406, gnl\|rn3\|chr6 (1720735-1720922)
	165-406, gnl\|xenTro1\|scaffold_1221 (15928-16119)

	443-558, gnl\|bosTau2\|chr11 (18832484-18832599)
	443-558, gnl\|Hg17\|chr2 (37382652-37382767)
	443-558, gnl\|Mm7\|chr17 (77244383-77244498)