Non-Coding RNA Search

Ss1.1-Pig1-87L06.5

Sequence:


               
               AGGAGGCCCTTGACTACCACTTTGGCCTTGAGGAGGGGGAGGGCATCAGAGACCTCTTCG
ACTGTGACTTTGGGGACCTCACCCCCCTGGATTTCTGATGGGGCTTAGGGGGACCAGGGC
CTCCTGAGATGCTCACCCTGTCTCTGCAGCCCTGGAGCCCCCTGCCCCTGGCCGTCGTCC
TAACCCAATTGGAAATGTTTAATTTATACCCCTCTCCCCTATCTCCAGAAGCTTCTAGCT
CTGGAGTCTGGCTACTGCCAGGAGGCTGAGCAAGCCAGGAAGGGAAGGATTCTGTTGGTG
GTGTGTATGTGCATGCACCCAACACCCAGCATGTGTGTACACGGGGTGAGTGGTGTGTGA
GCATGTGTGTGTGCATGTACCGGGGAATGAAGGTGAACACATCTGTGCGTGCACTGAAAA
CACGCCCCAGTGTGTCCGTGTGTGTGCATGGGTCCGTGTGTGCGCGTGGTGGGGGCTCTA
ACTGCACTTTTGGTCTCCTTGCTCCAGGGGCCCCACGAGGCCCAGGGGGGCCACCTGCCC
CCAGAATCCTGCGTGCTGACCAGGCCAGGTGGCGAGGCCTTGGCCTGCTTGTTTGCAGGA
CAGCGAGAGCACTTCTGTCGTCTTAAAGGTTTTTCTGATCGAAGCTTTAATGGAGCGTTA
TTTATTTATCAAGGCCTTTTTGGCAAGCCTGGGGCACCAGCAAAGGGTAGGAGGGATGTG
GGGCTGATGCCGCAACTCCCTATACCTCTGAGCAAGGGCAGGGGTCCCTGAGCTGTTCTA
TGCCCTACTCCGAAGGAGCTGAGGCCTGAGTGGTTTATTTATTGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGGCCCTTGACTACCACTTTGGCCTTGAGGAGGGGGAGGGCATCAGAGACCTCTTCG
ACTGTGACTTTGGGGACCTCACCCCCCTGGATTTCTGATGGGGCTTAGGGGGACCAGGGC
CTCCTGAGATGCTCACCCTGTCTCTGCAGCCCTGGAGCCCCCTGCCCCTGGCCGTCGTCC
TAACCCAATTGGAAATGTTTAATTTATACCCCTCTCCCCTATCTCCAGAAGCTTCTAGCT
CTGGAGTCTGGCTACTGCCAGGAGGCTGAGCAAGCCAGGAAGGGAAGGATTCTGTTGGTG
GTGTGTATGTGCATGCACCCAACACCCAGCATGTGTGTACACGGGGTGAGTGGTGTGTGA
GCATGTGTGTGTGCATGTACCGGGGAATGAAGGTGAACACATCTGTGCGTGCACTGAAAA
CACGCCCCAGTGTGTCCGTGTGTGTGCATGGGTCCGTGTGTGCGCGTGGTGGGGGCTCTA
ACTGCACTTTTGGTCTCCTTGCTCCAGGGGCCCCACGAGGCCCAGGGGGGCCACCTGCCC
CCAGAATCCTGCGTGCTGACCAGGCCAGGTGGCGAGGCCTTGGCCTGCTTGTTTGCAGGA
CAGCGAGAGCACTTCTGTCGTCTTAAAGGTTTTTCTGATCGAAGCTTTAATGGAGCGTTA
TTTATTTATCAAGGCCTTTTTGGCAAGCCTGGGGCACCAGCAAAGGGTAGGAGGGATGTG
GGGCTGATGCCGCAACTCCCTATACCTCTGAGCAAGGGCAGGGGTCCCTGAGCTGTTCTA
TGCCCTACTCCGAAGGAGCTGAGGCCTGAGTGGTTTATTTATTGGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29726902|pdb|1O9K|S

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29726902|pdb|1O9K|S

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               328-473, - strand, RNAz p=0.991206
               

               
               535-650, - strand, RNAz p=0.993387

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               328-473, - strand, RNAz p=0.991206
               

               
               535-650, - strand, RNAz p=0.993387

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               216-650, gnl|bosTau2|chr19 (11804502-11804068)
               

               
               216-650, gnl|Hg17|chr20 (31728079-31727652)
               

               
               216-650, gnl|Mm7|chr2 (154301438-154300922)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               216-650, gnl|bosTau2|chr19 (11804502-11804068)
               

               
               216-650, gnl|Hg17|chr20 (31728079-31727652)
               

               
               216-650, gnl|Mm7|chr2 (154301438-154300922)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lnt (0.142308)
               

               
               clu (0.119646)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               clu (0.119646)
               

               
               eje (0.0988338)

	328-473, - strand, RNAz p=0.991206
	535-650, - strand, RNAz p=0.993387

	216-650, gnl\|bosTau2\|chr19 (11804502-11804068)
	216-650, gnl\|Hg17\|chr20 (31728079-31727652)
	216-650, gnl\|Mm7\|chr2 (154301438-154300922)