Non-Coding RNA Search

Ss1.1-Pig1-87L14.5

Sequence:


               
               CACACACCAGCCTGGCCTGACAGAGCCATCGGCGCCATGAAGGACGAGGTGGCTCTTCTG
GCCACTGTCACCCTCCTGGGAGTCCTGCTGCAAGCCTACTTCTCCCTGCAGGTGATTTCG
GCGCGCAGGGCCTTCCGCGTGTCGCCGCCGCTCACCACCGGCCCGCCGGAGTTCGAGCGT
GTCTACCGAGCCCAAGTAAACTGCAGCGAGTACTTCCCTCTGCTCCTCGCCACGCTCTGG
GTCGCCGGCATCTACTTTCACGAAGGTGCAGCGGCACTGTGTGGCCTCATCTACCTGTAC
GCACGCTTCCGCTACTTTCAGGGCTACGCCCGCTCTGCGCAGCAAAGGCTGGCCCCGATG
TACGCAAGCGCGTGCGCCCTCTGGCTTCTCTTGGCGCTGGCTGCTCTCGGCCTGCTCGCC
CACTTCCTTCCGGCTGCGCTGCGCACGGAGCTCCAGGAACTACTGCCAAGGGCCTGAGAG
AGGGGGACGCCGGGCGGGCGGAAATGAAGTAGAGCTGGAGTCTCCTGGAAGACGGAGGAG
GGTGCTCGCCCTGATCCTAGTCTCATTAAAGTGCTCCTAACCGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACACACCAGCCTGGCCTGACAGAGCCATCGGCGCCATGAAGGACGAGGTGGCTCTTCTG
GCCACTGTCACCCTCCTGGGAGTCCTGCTGCAAGCCTACTTCTCCCTGCAGGTGATTTCG
GCGCGCAGGGCCTTCCGCGTGTCGCCGCCGCTCACCACCGGCCCGCCGGAGTTCGAGCGT
GTCTACCGAGCCCAAGTAAACTGCAGCGAGTACTTCCCTCTGCTCCTCGCCACGCTCTGG
GTCGCCGGCATCTACTTTCACGAAGGTGCAGCGGCACTGTGTGGCCTCATCTACCTGTAC
GCACGCTTCCGCTACTTTCAGGGCTACGCCCGCTCTGCGCAGCAAAGGCTGGCCCCGATG
TACGCAAGCGCGTGCGCCCTCTGGCTTCTCTTGGCGCTGGCTGCTCTCGGCCTGCTCGCC
CACTTCCTTCCGGCTGCGCTGCGCACGGAGCTCCAGGAACTACTGCCAAGGGCCTGAGAG
AGGGGGACGCCGGGCGGGCGGAAATGAAGTAGAGCTGGAGTCTCCTGGAAGACGGAGGAG
GGTGCTCGCCCTGATCCTAGTCTCATTAAAGTGCTCCTAACCGAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               LTC4S_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               LTC4S_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               93-208, gnl|bosTau2|chr7 (502509-502623)
               

               
               93-208, gnl|Hg17|chr5 (179155189-179155303)
               

               
               93-208, gnl|Mm7|chr11 (50194199-50194086)
               


               
               346-526, gnl|bosTau2|chr7 (503197-503388)
               

               
               346-526, gnl|Hg17|chr5 (179155858-179156085)
               

               
               346-526, gnl|Mm7|chr11 (50193471-50193258)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-208, gnl|bosTau2|chr7 (502509-502623)
               

               
               93-208, gnl|Hg17|chr5 (179155189-179155303)
               

               
               93-208, gnl|Mm7|chr11 (50194199-50194086)
               


               
               346-526, gnl|bosTau2|chr7 (503197-503388)
               

               
               346-526, gnl|Hg17|chr5 (179155858-179156085)
               

               
               346-526, gnl|Mm7|chr11 (50193471-50193258)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cli (0.305623)
               

               
               fli (0.202881)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               fli (0.202881)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)

	93-208, gnl\|bosTau2\|chr7 (502509-502623)
	93-208, gnl\|Hg17\|chr5 (179155189-179155303)
	93-208, gnl\|Mm7\|chr11 (50194199-50194086)

	346-526, gnl\|bosTau2\|chr7 (503197-503388)
	346-526, gnl\|Hg17\|chr5 (179155858-179156085)
	346-526, gnl\|Mm7\|chr11 (50193471-50193258)

	cli (0.305623)
	fli (0.202881)
	nje (0.16592)
	eli (0.151814)
	hyp (0.142837)
	cst (0.140036)