Non-Coding RNA Search

Ss1.1-Pig1-87P06.5

Sequence:


               
               GATGTGTAATCTCAATATACTTTATGCTGCTTATATTTCAGTCATTACAATACAAGTTCA
TTTAGAGATAATGGGCTTTGTTAGCACTTTAAAGAAAAAAAATCACACCCATCCAATCTT
CTGTGCTGTTTCTGAGAAGAGAGTTTATTAATCAGTTAATTTAGACATTGTGGGGAGACG
TCATCCATTGGAGTGTCTTTCTTCACAAAAGACTTTGATTTAAGCCTTTTTGACTTTTCA
GATTTGAAACAATGAAAGGGCAGACATCCTTTAGAGCAACCCAAGAAATCTCCCTTTCTG
GAAAGAATTGGTATAGTCAGCCTTTGTCAGGAATCCACTATGAAACAGACCTAACACAGA
GGCTTCATCACCATGTAATATGTTATTTTCAGAGAGTTCCAAGAATTTCCAAGTTGTTCC
AAAATTGAGCTTTTGAAAATGTTGTAAATTGGACTTGGTCAAACACTTCTAGTCGTGTTC
TTAAAATGATTTTGCCAGTCTTATCTTTTCAAGGAAATTGCCACTTAAAGAGACAATAAA
TAAGCATTGTCCCTTTTGTCAGAAGTGGCTTGACTAAAACATGTCCAAATTTTAGTGGTT
AGTTAATAGTTTATATGAGAACTATCACAACTATTATACAGTAATTGTTAAACTACACTA
CAATAGCTCTATAACCACAAGGCTCTATGCTTATGTGCAAAGGCACTATTGCCAATACTT
TGTTCAAAATTTTGTCAGTTGTATTTACAAAAAAGATACTTTTTAAGAGCATATGTTATT
AATATTTGATATGATTTTTGAAATCAGAATATTGAAGATTACCTAGTATTGTATTTTAGC
CTAGATTAAGATTGAATACTTTAAAGAGATTTTTGAGTTGCAGAAAGATTATAAGTGTAA
GTTAAAAAGACAGACATTTATTTTCTGAGTCTGCAGGAGAAATAAGCTGAACACATAGTT
TTGTAGTTGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGTGTAATCTCAATATACTTTATGCTGCTTATATTTCAGTCATTACAATACAAGTTCA
TTTAGAGATAATGGGCTTTGTTAGCACTTTAAAGAAAAAAAATCACACCCATCCAATCTT
CTGTGCTGTTTCTGAGAAGAGAGTTTATTAATCAGTTAATTTAGACATTGTGGGGAGACG
TCATCCATTGGAGTGTCTTTCTTCACAAAAGACTTTGATTTAAGCCTTTTTGACTTTTCA
GATTTGAAACAATGAAAGGGCAGACATCCTTTAGAGCAACCCAAGAAATCTCCCTTTCTG
GAAAGAATTGGTATAGTCAGCCTTTGTCAGGAATCCACTATGAAACAGACCTAACACAGA
GGCTTCATCACCATGTAATATGTTATTTTCAGAGAGTTCCAAGAATTTCCAAGTTGTTCC
AAAATTGAGCTTTTGAAAATGTTGTAAATTGGACTTGGTCAAACACTTCTAGTCGTGTTC
TTAAAATGATTTTGCCAGTCTTATCTTTTCAAGGAAATTGCCACTTAAAGAGACAATAAA
TAAGCATTGTCCCTTTTGTCAGAAGTGGCTTGACTAAAACATGTCCAAATTTTAGTGGTT
AGTTAATAGTTTATATGAGAACTATCACAACTATTATACAGTAATTGTTAAACTACACTA
CAATAGCTCTATAACCACAAGGCTCTATGCTTATGTGCAAAGGCACTATTGCCAATACTT
TGTTCAAAATTTTGTCAGTTGTATTTACAAAAAAGATACTTTTTAAGAGCATATGTTATT
AATATTTGATATGATTTTTGAAATCAGAATATTGAAGATTACCTAGTATTGTATTTTAGC
CTAGATTAAGATTGAATACTTTAAAGAGATTTTTGAGTTGCAGAAAGATTATAAGTGTAA
GTTAAAAAGACAGACATTTATTTTCTGAGTCTGCAGGAGAAATAAGCTGAACACATAGTT
TTGTAGTTGCTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               186-300, - strand, RNAz p=0.988787

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-300, - strand, RNAz p=0.988787

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-972, gnl|bosTau2|chrX (16885866-16886835)
               

               
               2-972, gnl|Hg17|chrX (105924395-105925369)
               

               
               2-972, gnl|Mm7|chrX (134472053-134473284)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-972, gnl|bosTau2|chrX (16885866-16886835)
               

               
               2-972, gnl|Hg17|chrX (105924395-105925369)
               

               
               2-972, gnl|Mm7|chrX (134472053-134473284)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bfe (0.149858)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)
               

               
               tra (0.123092)

	2-972, gnl\|bosTau2\|chrX (16885866-16886835)
	2-972, gnl\|Hg17\|chrX (105924395-105925369)
	2-972, gnl\|Mm7\|chrX (134472053-134473284)