Non-Coding RNA Search

Ss1.1-Pig1-88B02.5

Sequence:


               
               ATGTATACTAGCCTTTTTGGACTCTGAAGAAGTTGTTAATTAGAAGCTATTTTTCTGAAA
GTGAATCTATATTCTTTCACAGTGCCAAGCTAGATGTCTTTATGAAAGAGTCAAATCTGG
GTTTGGGTTGTCTTTTTCTTTTCTCCCCACCCCCCCATTCATGGGTGGGAGGGTGGTTGG
TTGGTTTTGTGACTGAGCTTGTTCTGATTGATCTGTTAAAATAATCTTCTGTGCTCATGT
CCTTTTATGTATGTTTGGAACATTCCCAGCTTGGAACCTGTAATGTTCAAACCAAGTTTC
TCCAGTTTGAGGATACTGACAAGAGCAGATTTGTTCCCTGCCTTTGATCTGTAAACCTCC
CCTCTGAAAGGAGCAGTATCCCTTTAGAGTGGTTGTTAAAAGGGGTTGATGTCTGACCAA
TGAACTATATCGTTCCTGAGCAACACTGCTGTGTAAAAACTGTATTGGAGAGGGTAAAAC
GGCAGGGGCTTCTCCAGCGCAATTTGGTTTTACTTTATCCTCATGTCAACTGCAGTATCT
CTTGCTCTCTTAGTTTGATGGTTAAGGTACTTGTTGTTGGAAAAATAAGACGGGGGCTGA
TGGAGAGAGAGTAAAACCCAGTAGATGGTTATCTCTGGACCTTGATCTTGTCTGGAAACC
CTAACTTAACTCTGAAGGGGATACTGTCTCTTTTAATTCTCGCCTTGTATGAAAGGTAGA
TAATACTAATAACATTGCTTGATTTCTCTGCATATTATTACATTTAACCCTTTGAGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTATACTAGCCTTTTTGGACTCTGAAGAAGTTGTTAATTAGAAGCTATTTTTCTGAAA
GTGAATCTATATTCTTTCACAGTGCCAAGCTAGATGTCTTTATGAAAGAGTCAAATCTGG
GTTTGGGTTGTCTTTTTCTTTTCTCCCCACCCCCCCATTCATGGGTGGGAGGGTGGTTGG
TTGGTTTTGTGACTGAGCTTGTTCTGATTGATCTGTTAAAATAATCTTCTGTGCTCATGT
CCTTTTATGTATGTTTGGAACATTCCCAGCTTGGAACCTGTAATGTTCAAACCAAGTTTC
TCCAGTTTGAGGATACTGACAAGAGCAGATTTGTTCCCTGCCTTTGATCTGTAAACCTCC
CCTCTGAAAGGAGCAGTATCCCTTTAGAGTGGTTGTTAAAAGGGGTTGATGTCTGACCAA
TGAACTATATCGTTCCTGAGCAACACTGCTGTGTAAAAACTGTATTGGAGAGGGTAAAAC
GGCAGGGGCTTCTCCAGCGCAATTTGGTTTTACTTTATCCTCATGTCAACTGCAGTATCT
CTTGCTCTCTTAGTTTGATGGTTAAGGTACTTGTTGTTGGAAAAATAAGACGGGGGCTGA
TGGAGAGAGAGTAAAACCCAGTAGATGGTTATCTCTGGACCTTGATCTTGTCTGGAAACC
CTAACTTAACTCTGAAGGGGATACTGTCTCTTTTAATTCTCGCCTTGTATGAAAGGTAGA
TAATACTAATAACATTGCTTGATTTCTCTGCATATTATTACATTTAACCCTTTGAGCCCT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr19 (7013338-7014097)
               

               
               1-780, gnl|Hg17|chr17 (32985917-32985158)
               

               
               1-780, gnl|Mm7|chr11 (84080799-84081574)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr19 (7013338-7014097)
               

               
               1-780, gnl|Hg17|chr17 (32985917-32985158)
               

               
               1-780, gnl|Mm7|chr11 (84080799-84081574)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               ste (0.135208)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               ste (0.135208)

	1-780, gnl\|bosTau2\|chr19 (7013338-7014097)
	1-780, gnl\|Hg17\|chr17 (32985917-32985158)
	1-780, gnl\|Mm7\|chr11 (84080799-84081574)