Ss1.1-Pig1-88C19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGATGTTCTGCGTCTGCCACCCTCTTCCATCACCACGGACGCCAAAGGCCAGACGGTT CTGCGAATTACTCCAGACATGATGGCCACGTTGGCCAAGTCCCAGGTCACCACAGTCAAA CTGACCCAGGACCTCTTTGGGACAGGAGGTGGCACTGCAGGCAAAGGCATCTCTGCTACC TTACATGTCACTTCCACTCCAGTCCATGCCGCTGACAGCCCTGCCAAGGCCAGTCCAGCC AGTGCCTCTTCGTCCACTCCAGCAGGGACCACTGTGGTCAAAGTGACTCCTGACCTCAAG CCAACAGAAGCCTCGAGTTCTGCTTTCCGCTTGATGCCAGCACTGGGTGTGAGTGTGGCA GACCAGAAGGGGAAAAGCACAGTGGCCTCTTCTGAGGCAAAACCGGCTGCCACCATCCGC ATCGTGCAGGGCCTGGGCGTGATGCCTCCCAAGGCAGGCCAGACCATCACCGTGGCTGCT CACGCCAAGCAAGGGGCCTCCGTGGCCAGCGGGTCTGGAACTGTCCATACTTCCGCAGTG TCCTTGCCCAGCGTGAATGCTGCTGTGTCCAAGACTGTGGCTGTGGCTTCCGGGGCTGCC AATACCCCCATCAGCATCGGGGCAGGAGCCCCCGCCGTGCGGCAGGTCCCTGTTAGCACC ACGGTTGTCTCCACGTCCCAGGCCGGGAAGTTGCCCGCACGGATCACGGTTCCCCTGTCT GTCATTAGCCAGCCCATGAAGGGCAAGAGTGTGGTCACAGCCCCCATCATCAAAGGCAAC CTCGGGGCCAACCTCAGTGGGCTGGGCCGCAACATCATCCTTACCACCATGCCAGCGGGT ACCAAGCTCATTGCCGGCAACAAGCCGGTGAGTTTCCTCACTGCTCAGCAGTTGCAGCAG CTTCAACAGCAAGGTCAGGCCACACAGGTGCGCATCCAGACTGTCCCCGCATCCCATCTT CAACAGGGAACAGCCTCTGGTTCCTCCAAAGCGGTCTCCACTGTCGTCGTGACCACAGCT CCATCTCCTAAACAGGCACCTGAGCAGCAGTGATGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGATGTTCTGCGTCTGCCACCCTCTTCCATCACCACGGACGCCAAAGGCCAGACGGTT CTGCGAATTACTCCAGACATGATGGCCACGTTGGCCAAGTCCCAGGTCACCACAGTCAAA CTGACCCAGGACCTCTTTGGGACAGGAGGTGGCACTGCAGGCAAAGGCATCTCTGCTACC TTACATGTCACTTCCACTCCAGTCCATGCCGCTGACAGCCCTGCCAAGGCCAGTCCAGCC AGTGCCTCTTCGTCCACTCCAGCAGGGACCACTGTGGTCAAAGTGACTCCTGACCTCAAG CCAACAGAAGCCTCGAGTTCTGCTTTCCGCTTGATGCCAGCACTGGGTGTGAGTGTGGCA GACCAGAAGGGGAAAAGCACAGTGGCCTCTTCTGAGGCAAAACCGGCTGCCACCATCCGC ATCGTGCAGGGCCTGGGCGTGATGCCTCCCAAGGCAGGCCAGACCATCACCGTGGCTGCT CACGCCAAGCAAGGGGCCTCCGTGGCCAGCGGGTCTGGAACTGTCCATACTTCCGCAGTG TCCTTGCCCAGCGTGAATGCTGCTGTGTCCAAGACTGTGGCTGTGGCTTCCGGGGCTGCC AATACCCCCATCAGCATCGGGGCAGGAGCCCCCGCCGTGCGGCAGGTCCCTGTTAGCACC ACGGTTGTCTCCACGTCCCAGGCCGGGAAGTTGCCCGCACGGATCACGGTTCCCCTGTCT GTCATTAGCCAGCCCATGAAGGGCAAGAGTGTGGTCACAGCCCCCATCATCAAAGGCAAC CTCGGGGCCAACCTCAGTGGGCTGGGCCGCAACATCATCCTTACCACCATGCCAGCGGGT ACCAAGCTCATTGCCGGCAACAAGCCGGTGAGTTTCCTCACTGCTCAGCAGTTGCAGCAG CTTCAACAGCAAGGTCAGGCCACACAGGTGCGCATCCAGACTGTCCCCGCATCCCATCTT CAACAGGGAACAGCCTCTGGTTCCTCCAAAGCGGTCTCCACTGTCGTCGTGACCACAGCT CCATCTCCTAAACAGGCACCTGAGCAGCAGTGATGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 40-199, - strand, RNAz p=0.993392 | |
| 280-399, - strand, RNAz p=0.938515 | |
| 923-1040, - strand, RNAz p=0.667491 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-199, - strand, RNAz p=0.993392 | |
| 280-399, - strand, RNAz p=0.938515 | |
| 923-1040, - strand, RNAz p=0.667491 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 1-688, gnl|bosTau2|chr29 (29432334-29433000) | |
| 1-688, gnl|Hg17|chr11 (129245282-129244595) | |
| 1-688, gnl|Mm7|chr9 (31316415-31317102) | |
| 923-1054, gnl|bosTau2|chr29 (29436564-29436695) | |
| 923-1054, gnl|canFam2|chr5 (7984174-7984012) | |
| 923-1054, gnl|danRer3|chr21 (12645364-12645207) | |
| 923-1054, gnl|echTel1|scaffold_162786 (2867-3030) | |
| 923-1054, gnl|fr1|chrUn (4925941-4925807) | |
| 923-1054, gnl|galGal2|chr24 (1538215-1538053) | |
| 923-1054, gnl|hg17|chr11 (129239831-129239993) | |
| 923-1054, gnl|Hg17|chr11 (129239962-129239829) | |
| 923-1054, gnl|loxAfr1|scaffold_53150 (11867-12029) | |
| 923-1054, gnl|mm7|chr9 (31322499-31322337) | |
| 923-1054, gnl|Mm7|chr9 (31322368-31322498) | |
| 923-1054, gnl|monDom2|scaffold_15 (18699917-18700072) | |
| 923-1054, gnl|oryCun1|scaffold_186999 (38312-38473) | |
| 923-1054, gnl|panTro1|chr9 (131368361-131368523) | |
| 923-1054, gnl|rheMac2|chr14 (127931522-127931684) | |
| 923-1054, gnl|rn3|chr8 (31183874-31183714) | |
| 923-1054, gnl|tetNig1|chr7 (4070861-4070994) | |
| 923-1054, gnl|xenTro1|scaffold_383 (191071-190919) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-688, gnl|bosTau2|chr29 (29432334-29433000) | |
| 1-688, gnl|Hg17|chr11 (129245282-129244595) | |
| 1-688, gnl|Mm7|chr9 (31316415-31317102) | |
| 923-1054, gnl|bosTau2|chr29 (29436564-29436695) | |
| 923-1054, gnl|canFam2|chr5 (7984174-7984012) | |
| 923-1054, gnl|danRer3|chr21 (12645364-12645207) | |
| 923-1054, gnl|echTel1|scaffold_162786 (2867-3030) | |
| 923-1054, gnl|fr1|chrUn (4925941-4925807) | |
| 923-1054, gnl|galGal2|chr24 (1538215-1538053) | |
| 923-1054, gnl|hg17|chr11 (129239831-129239993) | |
| 923-1054, gnl|Hg17|chr11 (129239962-129239829) | |
| 923-1054, gnl|loxAfr1|scaffold_53150 (11867-12029) | |
| 923-1054, gnl|mm7|chr9 (31322499-31322337) | |
| 923-1054, gnl|Mm7|chr9 (31322368-31322498) | |
| 923-1054, gnl|monDom2|scaffold_15 (18699917-18700072) | |
| 923-1054, gnl|oryCun1|scaffold_186999 (38312-38473) | |
| 923-1054, gnl|panTro1|chr9 (131368361-131368523) | |
| 923-1054, gnl|rheMac2|chr14 (127931522-127931684) | |
| 923-1054, gnl|rn3|chr8 (31183874-31183714) | |
| 923-1054, gnl|tetNig1|chr7 (4070861-4070994) | |
| 923-1054, gnl|xenTro1|scaffold_383 (191071-190919) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| fty (0.17584) | |
| pla (0.133672) |