Ss1.1-Pig1-88G23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATGGGTGTTGCTGAGAGGCACCAGAAGCTGAGGTCTCAGTATTTCTTTGACTGCAACT GCCCGCCTTGTGAACGAGAGAAGCAGAGACCCTCGGCGTTGGAACCGAGGAGGGAAGCCT TCTGCTGTCACCGTTGCAGAGCTCTCCTGCAGGGAGATGATGTTCTGAGCTGTGGCAGCA CATCTTGTCCGGCATCGGTCCGTAGGCATCACCTAGACTCTCGGCTGCAAGACCTTCAGC AGCAGGTGGGGCTGGCCCGGAAGCTTCTCCGAAACTGTAAAGCAGAACGAGCCATTCAGC TGTTGTTGGGGTGCCAACACGATGCTGAGAGCTTCCTGTCAGCAGAACACAGTGTGGTGG GAGAAATCGCGGATGACCTGGCCCAGGCCTATGCTGCCTTAGGGGACTGGAAGAAGTCAG CGAGCCACCTACAGAAGAGTCTTCGGGTAGTTGAGGTTCGCCACGGGCCGTCCAGTGTTG AGATGGGCCATGAGCTCTTCAAACTGGCCCAAATCTTCTTCAATGGGTTGGCAATCCCCG AAGCTCTGAACACAATCCAAAGAGCAGAAAAGGTTCTGTTGGTGCACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATGGGTGTTGCTGAGAGGCACCAGAAGCTGAGGTCTCAGTATTTCTTTGACTGCAACT GCCCGCCTTGTGAACGAGAGAAGCAGAGACCCTCGGCGTTGGAACCGAGGAGGGAAGCCT TCTGCTGTCACCGTTGCAGAGCTCTCCTGCAGGGAGATGATGTTCTGAGCTGTGGCAGCA CATCTTGTCCGGCATCGGTCCGTAGGCATCACCTAGACTCTCGGCTGCAAGACCTTCAGC AGCAGGTGGGGCTGGCCCGGAAGCTTCTCCGAAACTGTAAAGCAGAACGAGCCATTCAGC TGTTGTTGGGGTGCCAACACGATGCTGAGAGCTTCCTGTCAGCAGAACACAGTGTGGTGG GAGAAATCGCGGATGACCTGGCCCAGGCCTATGCTGCCTTAGGGGACTGGAAGAAGTCAG CGAGCCACCTACAGAAGAGTCTTCGGGTAGTTGAGGTTCGCCACGGGCCGTCCAGTGTTG AGATGGGCCATGAGCTCTTCAAACTGGCCCAAATCTTCTTCAATGGGTTGGCAATCCCCG AAGCTCTGAACACAATCCAAAGAGCAGAAAAGGTTCTGTTGGTGCACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 60-153, - strand, RNAz p=0.968109 | |
| 401-519, + strand, RNAz p=0.693628 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 60-153, - strand, RNAz p=0.968109 | |
| 401-519, + strand, RNAz p=0.693628 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-153, gnl|bosTau2|chr19 (17403149-17403000) | |
| 1-153, gnl|canFam2|chr9 (49235215-49235495) | |
| 1-153, gnl|dasNov1|scaffold_86702 (218-504) | |
| 1-153, gnl|galGal2|chr19 (5103440-5103721) | |
| 1-153, gnl|hg17|chr17 (1636772-1637054) | |
| 1-153, gnl|Hg17|chr17 (1637002-1636853) | |
| 1-153, gnl|mm7|chr11 (75482081-75481821) | |
| 1-153, gnl|Mm7|chr11 (75481871-75482020) | |
| 1-153, gnl|monDom2|scaffold_86 (2980416-2980690) | |
| 1-153, gnl|panTro1|chr19 (1780393-1780675) | |
| 1-153, gnl|rheMac2|chr16 (1584555-1584835) | |
| 1-153, gnl|rn3|chr10 (62718183-62717914) | |
| 401-528, gnl|bosTau2|chr19 (17400485-17400358) | |
| 401-528, gnl|canFam2|chr9 (49231203-49231370) | |
| 401-528, gnl|dasNov1|scaffold_102722 (5722-5555) | |
| 401-528, gnl|echTel1|scaffold_318383 (156749-156924) | |
| 401-528, gnl|galGal2|chr19 (5101275-5101478) | |
| 401-528, gnl|hg17|chr17 (1633060-1633224) | |
| 401-528, gnl|Hg17|chr17 (1633204-1633077) | |
| 401-528, gnl|loxAfr1|scaffold_4372 (61589-61424) | |
| 401-528, gnl|mm7|chr11 (75485135-75484971) | |
| 401-528, gnl|Mm7|chr11 (75484989-75485116) | |
| 401-528, gnl|monDom2|scaffold_86 (2977528-2977688) | |
| 401-528, gnl|oryCun1|scaffold_200944 (141787-141943) | |
| 401-528, gnl|panTro1|chr19 (1776619-1776783) | |
| 401-528, gnl|rheMac2|chr16 (1581241-1581405) | |
| 401-528, gnl|rn3|chr10 (62721344-62721180) | |
| 401-528, gnl|tetNig1|chr7 (7112713-7112866) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-153, gnl|bosTau2|chr19 (17403149-17403000) | |
| 1-153, gnl|canFam2|chr9 (49235215-49235495) | |
| 1-153, gnl|dasNov1|scaffold_86702 (218-504) | |
| 1-153, gnl|galGal2|chr19 (5103440-5103721) | |
| 1-153, gnl|hg17|chr17 (1636772-1637054) | |
| 1-153, gnl|Hg17|chr17 (1637002-1636853) | |
| 1-153, gnl|mm7|chr11 (75482081-75481821) | |
| 1-153, gnl|Mm7|chr11 (75481871-75482020) | |
| 1-153, gnl|monDom2|scaffold_86 (2980416-2980690) | |
| 1-153, gnl|panTro1|chr19 (1780393-1780675) | |
| 1-153, gnl|rheMac2|chr16 (1584555-1584835) | |
| 1-153, gnl|rn3|chr10 (62718183-62717914) | |
| 401-528, gnl|bosTau2|chr19 (17400485-17400358) | |
| 401-528, gnl|canFam2|chr9 (49231203-49231370) | |
| 401-528, gnl|dasNov1|scaffold_102722 (5722-5555) | |
| 401-528, gnl|echTel1|scaffold_318383 (156749-156924) | |
| 401-528, gnl|galGal2|chr19 (5101275-5101478) | |
| 401-528, gnl|hg17|chr17 (1633060-1633224) | |
| 401-528, gnl|Hg17|chr17 (1633204-1633077) | |
| 401-528, gnl|loxAfr1|scaffold_4372 (61589-61424) | |
| 401-528, gnl|mm7|chr11 (75485135-75484971) | |
| 401-528, gnl|Mm7|chr11 (75484989-75485116) | |
| 401-528, gnl|monDom2|scaffold_86 (2977528-2977688) | |
| 401-528, gnl|oryCun1|scaffold_200944 (141787-141943) | |
| 401-528, gnl|panTro1|chr19 (1776619-1776783) | |
| 401-528, gnl|rheMac2|chr16 (1581241-1581405) | |
| 401-528, gnl|rn3|chr10 (62721344-62721180) | |
| 401-528, gnl|tetNig1|chr7 (7112713-7112866) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| pgl (0.118483) |