Non-Coding RNA Search

Ss1.1-Pig1-88L06.5

Sequence:


               
               CCTGTTGCTCCCAGCCATCAGCCACAACAAGACCTCTCGGCCCAAGATGTCCCTGGTGAT
GCCTGCCATGGCCCCCAATGAGACCCTGTCAGGCCGGGGGCCCCCGGGGGACTATGAGGA
GATGATGCAGATCGAGTGTGAGGTCATGGACACCAGGGTGATCCACATCAAGACCTCCAC
AGTGCCCCCCTCGCTCCGAAAACAGCCAGCCTCAACCCCGGGCAATGCCACAGGTGGCCC
CTTGCCAGCCTCTGCAGCCAGCCAGGCCAGCCAGGCCGCCCGTCAGCCCCTCTACCTCAA
TCACCCCTGACCTCTGACGCACACTGACTTAGACCCGGGGGCGGGGTGGGGGGACCAAGC
GGAACCGTTTCGAATCTTCCTGATCCCCAGGCTTGGGGCAGGTGGTGAAGCAGAGACAGG
GTATGGGGGCTGAGCACTTGTTTGGAGGGAGGAGAAGGTTGCCTCTCTCCTCACCCCTGT
GTGCAATATAGGCCTCCTCTCATTGCTGTGAACCCCAGTCCCTGCCTCTTGGAGGGTGCT
GAGTGCAGTTAGGTCTGGGGGGTGAGGGCGGGCTCCCGTACACTCTTTACTCTTGTTTCT
GTTCGGGGGGTGGAGGCGGGGATTTAGTCCCCAGGCGGGACAAGGGCAGTTTTTTACACT
TAGGAGCTAGTTCCCGGGAGTAATGGCGCAGTGGTGGAGGGGGTCAGGTGTATGTACGGG
CGTACCTTCTTTTTTTATTTTTAAATAAACAGCTTGGAGGGAGTCGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTTGCTCCCAGCCATCAGCCACAACAAGACCTCTCGGCCCAAGATGTCCCTGGTGAT
GCCTGCCATGGCCCCCAATGAGACCCTGTCAGGCCGGGGGCCCCCGGGGGACTATGAGGA
GATGATGCAGATCGAGTGTGAGGTCATGGACACCAGGGTGATCCACATCAAGACCTCCAC
AGTGCCCCCCTCGCTCCGAAAACAGCCAGCCTCAACCCCGGGCAATGCCACAGGTGGCCC
CTTGCCAGCCTCTGCAGCCAGCCAGGCCAGCCAGGCCGCCCGTCAGCCCCTCTACCTCAA
TCACCCCTGACCTCTGACGCACACTGACTTAGACCCGGGGGCGGGGTGGGGGGACCAAGC
GGAACCGTTTCGAATCTTCCTGATCCCCAGGCTTGGGGCAGGTGGTGAAGCAGAGACAGG
GTATGGGGGCTGAGCACTTGTTTGGAGGGAGGAGAAGGTTGCCTCTCTCCTCACCCCTGT
GTGCAATATAGGCCTCCTCTCATTGCTGTGAACCCCAGTCCCTGCCTCTTGGAGGGTGCT
GAGTGCAGTTAGGTCTGGGGGGTGAGGGCGGGCTCCCGTACACTCTTTACTCTTGTTTCT
GTTCGGGGGGTGGAGGCGGGGATTTAGTCCCCAGGCGGGACAAGGGCAGTTTTTTACACT
TAGGAGCTAGTTCCCGGGAGTAATGGCGCAGTGGTGGAGGGGGTCAGGTGTATGTACGGG
CGTACCTTCTTTTTTTATTTTTAAATAAACAGCTTGGAGGGAGTCGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47203367|emb|CAG14825.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47203367|emb|CAG14825.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               509-659, + strand, RNAz p=0.608112

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               509-659, + strand, RNAz p=0.608112

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               80-768, gnl|bosTau2|chr23 (23745405-23746106)
               

               
               80-768, gnl|Hg17|chr6 (32191724-32191023)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-768, gnl|bosTau2|chr23 (23745405-23746106)
               

               
               80-768, gnl|Hg17|chr6 (32191724-32191023)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               mcp (0.341297)
               

               
               ebs (0.236602)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)
               

               
               ebs (0.236602)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	80-768, gnl\|bosTau2\|chr23 (23745405-23746106)
	80-768, gnl\|Hg17\|chr6 (32191724-32191023)

	mcp (0.341297)
	ebs (0.236602)
	col (0.195008)
	nlu (0.191681)
	fty (0.17584)
	cag (0.151194)
	hyp (0.142837)
	cov (0.132153)
	eru (0.120048)
	eje (0.0988338)