Non-Coding RNA Search

Ss1.1-Pig1-88M21.5

Sequence:


               
               ACATTTTTATAAATATGTATGTGTTGCAAATATATAATATGGCTGAATTATAATTTAATA
AAGCTTTTAGAGGTTTTGAGGGTTTTATGGGCTCACAAATATTAAAAGAACAGAACTGCT
GCAGGAATTCTACCACCAGACTCTGCCCCATGATCTCCCACTCTAACTCAGAAGTCCCTT
CACACCCCCCTCTCTCTGCAGCAAGCCTTCAATGCCACGGCTGTGGTGCGGCACATGAGG
AAGCTACAGCTGGGCACCAGCCAGGAGGGGCAGGGACAGACGGCCAGCCATGGGGAGCTG
CTAACACCAGCAGCTGGGGGTGAGGACCAGGGCCCTGGAAGGGCATGGGCGGGGGGTCCA
CAGAGAGACGCCCAGGCTGAAGCAGAGGGTCTGCTCCTACAGCCGGCTGTGTTTTCTTCC
TGAGCAGGTTCTGCGGCTGGCTGTTGCTGTCGAGACTGCTGCGTGGAGCCAGGTCCAGAA
GTGTCTCCCACACTGCCCCCCCAGCTCTAGGGGCTGGGATCCCCTATGTGGGAGGGCCTG
GGGGTGGCCTGCTCCCACTCCCTCCATAAACTGGGGAGTTACCCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATTTTTATAAATATGTATGTGTTGCAAATATATAATATGGCTGAATTATAATTTAATA
AAGCTTTTAGAGGTTTTGAGGGTTTTATGGGCTCACAAATATTAAAAGAACAGAACTGCT
GCAGGAATTCTACCACCAGACTCTGCCCCATGATCTCCCACTCTAACTCAGAAGTCCCTT
CACACCCCCCTCTCTCTGCAGCAAGCCTTCAATGCCACGGCTGTGGTGCGGCACATGAGG
AAGCTACAGCTGGGCACCAGCCAGGAGGGGCAGGGACAGACGGCCAGCCATGGGGAGCTG
CTAACACCAGCAGCTGGGGGTGAGGACCAGGGCCCTGGAAGGGCATGGGCGGGGGGTCCA
CAGAGAGACGCCCAGGCTGAAGCAGAGGGTCTGCTCCTACAGCCGGCTGTGTTTTCTTCC
TGAGCAGGTTCTGCGGCTGGCTGTTGCTGTCGAGACTGCTGCGTGGAGCCAGGTCCAGAA
GTGTCTCCCACACTGCCCCCCCAGCTCTAGGGGCTGGGATCCCCTATGTGGGAGGGCCTG
GGGGTGGCCTGCTCCCACTCCCTCCATAAACTGGGGAGTTACCCTGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               464-588, - strand, RNAz p=0.961099

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               464-588, - strand, RNAz p=0.961099

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               502-599, - strand, RNAmicro p=0.905441

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               502-599, - strand, RNAmicro p=0.905441

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-588, gnl|bosTau2|chr22 (11907088-11906499)
               

               
               16-588, gnl|Hg17|chr3 (9774716-9774133)
               

               
               16-588, gnl|Mm7|chr6 (113495671-113495157)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-588, gnl|bosTau2|chr22 (11907088-11906499)
               

               
               16-588, gnl|Hg17|chr3 (9774716-9774133)
               

               
               16-588, gnl|Mm7|chr6 (113495671-113495157)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	16-588, gnl\|bosTau2\|chr22 (11907088-11906499)
	16-588, gnl\|Hg17\|chr3 (9774716-9774133)
	16-588, gnl\|Mm7\|chr6 (113495671-113495157)