Non-Coding RNA Search

Ss1.1-Pig1-88N02.5

Sequence:


               
               CGGCGGAGTCGGCGCTCCAAGTTGTGGAGAAGCTGCAGGCGCGCCTAGCCGCGAACCCGG
ACCCGAAGAAGCTATTGAAATATTTGAAGAAACTCTCTGCCTTGCCTATTACAATAGACA
TTCTTGCGGAGACTGGAGTTGGGAAGACGGTCAATAGCTTGCGAAAACATGAGCACGTTG
GAAGTTTTGCCAGGGACCTAGTGGCCCAGTGGAAAAAGCTGGTTCCTGTGGAACGAAACC
CCGAGCCTGATGAACAGGACTTGGAGAAGAGCAATTCTCGAAAGCGTCCTAGGGATGCCC
TTAAGGAGGAGGAGGAGGTGGAGGGGGAGGGGGACTACCCAGAAAGCTGGAAAGCCTCTG
GGAGCCGATCGTATAGTCCTGATAATAGACAGAAGAAACACAGAAAACTCTCAGAGCTCG
AGCGGCCTCAGAAAGTATCTCACAGTCAGGAGAGGAGAGACGAGAGAAAGAGGTACCACA
GAGCCTCTCCAGTTTACTCTTCAGACCACGAGTCTTCCGACTACGGCCATGTTCAGTCCC
CTCCATCATCCACCAGCCCTCATCAGATGTCTGGGGACCATTACAGATCCCTGGAGGAGG
ACCACGAGCCCTTTGTTCCACACCAGAAGCCTGGCAAAGGCCACGGTAATGCCTTTCAGG
ACAGACTGGGGGTCAGCCAAGAACGCCACCTGGGTGAAGCCCAGGGAAGAGAAGTCATGA
GTCAGAGCAAGGAGCACAGATCTTCCCATAAAGAAAAACGTCCCGTGGAGGCCAAAGGAG
ACGAGAAGTCTTCTTTTAGCAGAGAAAAATCACACAAGGCCCTCTCCAAAGAGGAAAACC
GGTGGCTGCCCTCTGGGGACAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGGAGTCGGCGCTCCAAGTTGTGGAGAAGCTGCAGGCGCGCCTAGCCGCGAACCCGG
ACCCGAAGAAGCTATTGAAATATTTGAAGAAACTCTCTGCCTTGCCTATTACAATAGACA
TTCTTGCGGAGACTGGAGTTGGGAAGACGGTCAATAGCTTGCGAAAACATGAGCACGTTG
GAAGTTTTGCCAGGGACCTAGTGGCCCAGTGGAAAAAGCTGGTTCCTGTGGAACGAAACC
CCGAGCCTGATGAACAGGACTTGGAGAAGAGCAATTCTCGAAAGCGTCCTAGGGATGCCC
TTAAGGAGGAGGAGGAGGTGGAGGGGGAGGGGGACTACCCAGAAAGCTGGAAAGCCTCTG
GGAGCCGATCGTATAGTCCTGATAATAGACAGAAGAAACACAGAAAACTCTCAGAGCTCG
AGCGGCCTCAGAAAGTATCTCACAGTCAGGAGAGGAGAGACGAGAGAAAGAGGTACCACA
GAGCCTCTCCAGTTTACTCTTCAGACCACGAGTCTTCCGACTACGGCCATGTTCAGTCCC
CTCCATCATCCACCAGCCCTCATCAGATGTCTGGGGACCATTACAGATCCCTGGAGGAGG
ACCACGAGCCCTTTGTTCCACACCAGAAGCCTGGCAAAGGCCACGGTAATGCCTTTCAGG
ACAGACTGGGGGTCAGCCAAGAACGCCACCTGGGTGAAGCCCAGGGAAGAGAAGTCATGA
GTCAGAGCAAGGAGCACAGATCTTCCCATAAAGAAAAACGTCCCGTGGAGGCCAAAGGAG
ACGAGAAGTCTTCTTTTAGCAGAGAAAAATCACACAAGGCCCTCTCCAAAGAGGAAAACC
GGTGGCTGCCCTCTGGGGACAGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55586465|ref|XP_513196.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55586465|ref|XP_513196.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               235-433, - strand, RNAz p=0.772004
               

               
               748-862, - strand, RNAz p=0.997453

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-433, - strand, RNAz p=0.772004
               

               
               748-862, - strand, RNAz p=0.997453

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               235-862, gnl|bosTau2|chr2 (82446541-82445920)
               

               
               235-862, gnl|Hg17|chr1 (23822640-23823264)
               

               
               235-862, gnl|Mm7|chr4 (135389846-135389237)
               


               
               288-840, gnl|bosTau2|chr24 (38649581-38650115)
               

               
               288-840, gnl|Hg17|chr18 (42815350-42814847)
               

               
               288-840, gnl|Mm7|chr4 (135389793-135389319)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               235-862, gnl|bosTau2|chr2 (82446541-82445920)
               

               
               235-862, gnl|Hg17|chr1 (23822640-23823264)
               

               
               235-862, gnl|Mm7|chr4 (135389846-135389237)
               


               
               288-840, gnl|bosTau2|chr24 (38649581-38650115)
               

               
               288-840, gnl|Hg17|chr18 (42815350-42814847)
               

               
               288-840, gnl|Mm7|chr4 (135389793-135389319)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ste (0.135208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)

	235-433, - strand, RNAz p=0.772004
	748-862, - strand, RNAz p=0.997453

	235-862, gnl\|bosTau2\|chr2 (82446541-82445920)
	235-862, gnl\|Hg17\|chr1 (23822640-23823264)
	235-862, gnl\|Mm7\|chr4 (135389846-135389237)

	288-840, gnl\|bosTau2\|chr24 (38649581-38650115)
	288-840, gnl\|Hg17\|chr18 (42815350-42814847)
	288-840, gnl\|Mm7\|chr4 (135389793-135389319)