Non-Coding RNA Search

Ss1.1-Pig1-88P22.5

Sequence:


               
               CCCGGTCACTCTGTTCTATCAAGTCCCATTGCCGAAAAGTACACGAAGGAGACTCAGAGC
CAAGGTACAGATGCCATGTGTGTGACAAATGCTTCACAAGGGGCAACAACCTCACTGTGC
ACCTTCGCAAGAAGCACCAGTTCAAGTGGCCCTCTGGGCACCCCCGTTTTCGGTACAAGG
AGCATGAAGACGGCTACATGCGGCTGCAGCTGGTTCGCTATGAAAGCGTGGAGCTGACGC
AGCAGCTGCTGCAGCAGCTACAAGAGGGATCAGGCCTAGGAGCATCACTGAATGAGAGCA
GCCTGCAGGGCATCATTCTAGAAACAGTGCCAGGGGAGCCAGGACCCCCGGAAGAGGTAG
AAGAGGAAGAGGAGGGCAGGCGTGGTGAGGGGACAGCCCCCTCGGCCTCTCAGGACACTT
CCAACCCTGTCGTCCATGGGGAGAATCAGACCAGCGTCCAAGGAGAACGAGAGATCGTCT
ACTACGTGCTGTCTGAGGCCCCGGGAGAGCCCCCCCCAGCCCCTGAGCCCCGCTTGGGGG
AAGTCATGGAAAAGCTTCAGGGAATAGCTGAGGAGCCAGAAGTCCAGATGGTGTGACGGC
TGCAGAGCCTGACCATTGCTGCCCCCAGGCCCTAGGGTTTGAGCCGGGCTGGTAACAGTG
CCCCTGGTGGGCAGCCCTGCCAATGAATGCCTTTAGGAGTGGCGCCCAGGGCAGNTGTGG
TCCACTCTGGACCTGGCTCGCCTCATCGGGCAGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGTCACTCTGTTCTATCAAGTCCCATTGCCGAAAAGTACACGAAGGAGACTCAGAGC
CAAGGTACAGATGCCATGTGTGTGACAAATGCTTCACAAGGGGCAACAACCTCACTGTGC
ACCTTCGCAAGAAGCACCAGTTCAAGTGGCCCTCTGGGCACCCCCGTTTTCGGTACAAGG
AGCATGAAGACGGCTACATGCGGCTGCAGCTGGTTCGCTATGAAAGCGTGGAGCTGACGC
AGCAGCTGCTGCAGCAGCTACAAGAGGGATCAGGCCTAGGAGCATCACTGAATGAGAGCA
GCCTGCAGGGCATCATTCTAGAAACAGTGCCAGGGGAGCCAGGACCCCCGGAAGAGGTAG
AAGAGGAAGAGGAGGGCAGGCGTGGTGAGGGGACAGCCCCCTCGGCCTCTCAGGACACTT
CCAACCCTGTCGTCCATGGGGAGAATCAGACCAGCGTCCAAGGAGAACGAGAGATCGTCT
ACTACGTGCTGTCTGAGGCCCCGGGAGAGCCCCCCCCAGCCCCTGAGCCCCGCTTGGGGG
AAGTCATGGAAAAGCTTCAGGGAATAGCTGAGGAGCCAGAAGTCCAGATGGTGTGACGGC
TGCAGAGCCTGACCATTGCTGCCCCCAGGCCCTAGGGTTTGAGCCGGGCTGGTAACAGTG
CCCCTGGTGGGCAGCCCTGCCAATGAATGCCTTTAGGAGTGGCGCCCAGGGCAGNTGTGG
TCCACTCTGGACCTGGCTCGCCTCATCGGGCAGTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               188-307, + strand, RNAz p=0.686079

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-307, + strand, RNAz p=0.686079

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               150-756, gnl|bosTau2|chr15 (14318136-14318737)
               

               
               150-756, gnl|Hg17|chr11 (118509980-118510577)
               

               
               150-756, gnl|Mm7|chr9 (44230941-44230361)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-756, gnl|bosTau2|chr15 (14318136-14318737)
               

               
               150-756, gnl|Hg17|chr11 (118509980-118510577)
               

               
               150-756, gnl|Mm7|chr9 (44230941-44230361)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hlv (0.139256)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               jej (0.0989218)

	150-756, gnl\|bosTau2\|chr15 (14318136-14318737)
	150-756, gnl\|Hg17\|chr11 (118509980-118510577)
	150-756, gnl\|Mm7\|chr9 (44230941-44230361)