Ss1.1-Pig1-89E13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGGACAGGCTTTAGCCCAGCGCCAGGCGGGAAAAATCTTCCCAGGAGTCACAAAGGG AACTCACAGAAATGATAGAAACTCTTGCCCACAAATTGGATGAAAAATCCAAGAAACTGA TGGAGCTTCAACAGCAGAACTTGAATCTTCAAAAAGCTCTGGAGAAAGCGGCAAACTTTT CAGGTCCTTGTCCCCAAGACTGGCTCTGGCATGAAGAAAACTGTTACAAATTTTCCTCTG GCCCATTTAGTTGGGAAAAAAGCCGGGAGAACTGCTTGTCTTTGGATGCCCAACTGCTGA AGATTAATAGCACAGACGATCTGGAATTCATCCAGCAAACCATCGCCCATTCCAGTTTCC CATTCTGGATGGGGTTATCTCTGAGGAAACCCAACAACTCATGGCTCTGGGAGGACGGTA CTCCTTTGATGCCCCACTTGTTTAGACTCCAGGGAGCTGCTTCCCAAATGTATCCTTCAG GCACCTGTGCGTATATACACAGGGGAATTGTTTTTGCTGAAAACTGCATTTTAAATGCAT TCAGTATATGTCAGAAGAGGGCGAATCTCTTGAGAGCACAGTGAATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGGACAGGCTTTAGCCCAGCGCCAGGCGGGAAAAATCTTCCCAGGAGTCACAAAGGG AACTCACAGAAATGATAGAAACTCTTGCCCACAAATTGGATGAAAAATCCAAGAAACTGA TGGAGCTTCAACAGCAGAACTTGAATCTTCAAAAAGCTCTGGAGAAAGCGGCAAACTTTT CAGGTCCTTGTCCCCAAGACTGGCTCTGGCATGAAGAAAACTGTTACAAATTTTCCTCTG GCCCATTTAGTTGGGAAAAAAGCCGGGAGAACTGCTTGTCTTTGGATGCCCAACTGCTGA AGATTAATAGCACAGACGATCTGGAATTCATCCAGCAAACCATCGCCCATTCCAGTTTCC CATTCTGGATGGGGTTATCTCTGAGGAAACCCAACAACTCATGGCTCTGGGAGGACGGTA CTCCTTTGATGCCCCACTTGTTTAGACTCCAGGGAGCTGCTTCCCAAATGTATCCTTCAG GCACCTGTGCGTATATACACAGGGGAATTGTTTTTGCTGAAAACTGCATTTTAAATGCAT TCAGTATATGTCAGAAGAGGGCGAATCTCTTGAGAGCACAGTGAATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 471-588, + strand, RNAz p=0.547012 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 471-588, + strand, RNAz p=0.547012 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 182-324, gnl|bosTau2|chr5 (58427175-58427317) | |
| 182-324, gnl|canFam2|chr27 (38855871-38855615) | |
| 182-324, gnl|dasNov1|scaffold_2081 (78617-78869) | |
| 182-324, gnl|echTel1|scaffold_311314 (49449-49189) | |
| 182-324, gnl|hg17|chr12 (10204599-10204855) | |
| 182-324, gnl|Hg17|chr12 (10204793-10204651) | |
| 182-324, gnl|loxAfr1|scaffold_103362 (5189-5449) | |
| 182-324, gnl|mm7|chr6 (129512093-129512339) | |
| 182-324, gnl|Mm7|chr6 (129512282-129512143) | |
| 182-324, gnl|panTro1|chrUn_random (36469019-36469275) | |
| 182-324, gnl|rheMac2|chr11 (10352900-10353156) | |
| 182-324, gnl|rn3|chr4 (166996364-166996611) | |
| 440-588, gnl|bosTau2|chr5 (58428358-58428506) | |
| 440-588, gnl|canFam2|chr27 (38857107-38856478) | |
| 440-588, gnl|dasNov1|scaffold_2081 (77589-78173) | |
| 440-588, gnl|echTel1|scaffold_311314 (50445-49862) | |
| 440-588, gnl|hg17|chr12 (10203489-10204126) | |
| 440-588, gnl|Hg17|chr12 (10203887-10203742) | |
| 440-588, gnl|loxAfr1|scaffold_103362 (4155-4746) | |
| 440-588, gnl|mm7|chr6 (129510689-129511313) | |
| 440-588, gnl|Mm7|chr6 (129511119-129510971) | |
| 440-588, gnl|oryCun1|scaffold_212582 (73525-74237) | |
| 440-588, gnl|panTro1|chrUn_random (36467907-36468546) | |
| 440-588, gnl|rheMac2|chr11 (10351763-10352424) | |
| 440-588, gnl|rn3|chr4 (166994449-166995066) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 182-324, gnl|bosTau2|chr5 (58427175-58427317) | |
| 182-324, gnl|canFam2|chr27 (38855871-38855615) | |
| 182-324, gnl|dasNov1|scaffold_2081 (78617-78869) | |
| 182-324, gnl|echTel1|scaffold_311314 (49449-49189) | |
| 182-324, gnl|hg17|chr12 (10204599-10204855) | |
| 182-324, gnl|Hg17|chr12 (10204793-10204651) | |
| 182-324, gnl|loxAfr1|scaffold_103362 (5189-5449) | |
| 182-324, gnl|mm7|chr6 (129512093-129512339) | |
| 182-324, gnl|Mm7|chr6 (129512282-129512143) | |
| 182-324, gnl|panTro1|chrUn_random (36469019-36469275) | |
| 182-324, gnl|rheMac2|chr11 (10352900-10353156) | |
| 182-324, gnl|rn3|chr4 (166996364-166996611) | |
| 440-588, gnl|bosTau2|chr5 (58428358-58428506) | |
| 440-588, gnl|canFam2|chr27 (38857107-38856478) | |
| 440-588, gnl|dasNov1|scaffold_2081 (77589-78173) | |
| 440-588, gnl|echTel1|scaffold_311314 (50445-49862) | |
| 440-588, gnl|hg17|chr12 (10203489-10204126) | |
| 440-588, gnl|Hg17|chr12 (10203887-10203742) | |
| 440-588, gnl|loxAfr1|scaffold_103362 (4155-4746) | |
| 440-588, gnl|mm7|chr6 (129510689-129511313) | |
| 440-588, gnl|Mm7|chr6 (129511119-129510971) | |
| 440-588, gnl|oryCun1|scaffold_212582 (73525-74237) | |
| 440-588, gnl|panTro1|chrUn_random (36467907-36468546) | |
| 440-588, gnl|rheMac2|chr11 (10351763-10352424) | |
| 440-588, gnl|rn3|chr4 (166994449-166995066) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |