Non-Coding RNA Search

Ss1.1-Pig1-89F08.5

Sequence:


               
               AACTTCCCTACGGAACAGCGCAGATGTCCACGGATGTCCGCCGTCGCCAGCCCCCTCAGC
AGGGCAGGGGGCAGCCACTTCCGAGGGGCGCCAGGGACCTGCCCCAGCCTCTCCATTTGG
GGCGGTTCCTTCCCCCTCTTCTTGCTCTTGGGTTTTCCCACAGGTATGAGGCCTGCCCAG
CACCCCCTCCCCCGGGAGCCTCACTCTCGTCTTCCAACAGGACTGGGCTTCAGCTACCCG
CCCAGCCCCCCCGGGGGGCTCCTGGCCTGGGGGATCCAGCGACCACAGGGGCTTCACAGC
TGCCCCAGACCCCTCCAGGGACCTGCAGCTGGGTGCCTGGCCCCCCGCCCAGCACCCTCG
TCCCCCGGAGGCCACGCCTGGTTCTCCAGACCGCCTGTGCCCGCCGTTCTTTTTGCTTTT
CTTCTTCCCCACACCCCCCCACCCCTAAGCCCCTGAATAATTTTTCTTTGTATAAACAGA
ACTCTCCTAGTCAGGAAGCAATATCATTTCAGGTCTAAAGAAGAAAGGGACATAAATCTG
GTCGAGGGCAAATTCAGTTTTACTGTATAAACTCAGTTGTGCAGTTCGGCCCCCCCCTCT
GTCTGCACTGGCAGCCGAGGGCCGCTGTTTTCTAATATTTGTATTCTAATTTAATTGTTT
TTTAAAAATGCAAATAAAAAAAAGTCAAGGTGAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTCCCTACGGAACAGCGCAGATGTCCACGGATGTCCGCCGTCGCCAGCCCCCTCAGC
AGGGCAGGGGGCAGCCACTTCCGAGGGGCGCCAGGGACCTGCCCCAGCCTCTCCATTTGG
GGCGGTTCCTTCCCCCTCTTCTTGCTCTTGGGTTTTCCCACAGGTATGAGGCCTGCCCAG
CACCCCCTCCCCCGGGAGCCTCACTCTCGTCTTCCAACAGGACTGGGCTTCAGCTACCCG
CCCAGCCCCCCCGGGGGGCTCCTGGCCTGGGGGATCCAGCGACCACAGGGGCTTCACAGC
TGCCCCAGACCCCTCCAGGGACCTGCAGCTGGGTGCCTGGCCCCCCGCCCAGCACCCTCG
TCCCCCGGAGGCCACGCCTGGTTCTCCAGACCGCCTGTGCCCGCCGTTCTTTTTGCTTTT
CTTCTTCCCCACACCCCCCCACCCCTAAGCCCCTGAATAATTTTTCTTTGTATAAACAGA
ACTCTCCTAGTCAGGAAGCAATATCATTTCAGGTCTAAAGAAGAAAGGGACATAAATCTG
GTCGAGGGCAAATTCAGTTTTACTGTATAAACTCAGTTGTGCAGTTCGGCCCCCCCCTCT
GTCTGCACTGGCAGCCGAGGGCCGCTGTTTTCTAATATTTGTATTCTAATTTAATTGTTT
TTTAAAAATGCAAATAAAAAAAAGTCAAGGTGAAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               133-280, - strand, RNAz p=0.997734

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               133-280, - strand, RNAz p=0.997734

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               210-329, + strand, RNAmicro p=0.934196

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               210-329, + strand, RNAmicro p=0.934196

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-536, gnl|bosTau2|chr7 (15781966-15782492)
               

               
               1-536, gnl|Hg17|chr19 (3989672-3990222)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-536, gnl|bosTau2|chr7 (15781966-15782492)
               

               
               1-536, gnl|Hg17|chr19 (3989672-3990222)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-536, gnl\|bosTau2\|chr7 (15781966-15782492)
	1-536, gnl\|Hg17\|chr19 (3989672-3990222)