Non-Coding RNA Search

Ss1.1-Pig1-89F24.5

Sequence:


               
               GGTACCTACATGTAGGTAGATGCGAACAGCATGTGCTCTGAAAGGTTACACTCCAAGATT
GAAAACAGTGATGAGGGAGAGGAGGGCACTGAACTTTTTCCATCAGAGAATTCTTTCATT
TAGTATGTAATTGAGAATATGGAAAGAATGACAAATGAATGAAAAGTCAAATTATTCCCC
ATGCCCACATCAGGCAAGTGAACTACCTTTTTTGTTTCCTCAGGGATTTTTGCCAAACCT
GACCATGCTAAGATGACATACCCAGAGACTCAGCTTCGCCACACACTGCCCTTATTGTTG
ATTTGTGACAATCTCCGTGACCCTGGGAACCTGGGGACAATTCTGAGATCTGCTGCTGGC
GCAGGCTGCAGCAGAGTGTTACTCACCAAAGGCTGTGTGGATGCCTGGGAGCCCAAGGTG
CTGCGGGCGGGGATGGGTGCGCATTTCCAGGTGCCCATCATCAACAATCTGGACTGGGAA
ACGGTGCCCAAGTACCTGCCCACCGACACCCGGGTCTACGTGGCTGACAACTGTGGCCTC
TACGCACAGGCCCAGGCCCGGGCGTCTACTAAGGCCAGTGACTACGGCTGGGTATGTGAC
CGACGAGCCAAGCTTCACCAGTATGAGGAGGAGGGAGAGGATGTCGAAAGTGGAGCCAGT
AAAGGCTGGCTCCTGAACTCCAGGTCCAGACTTACGACGCGGACTGGACAGAGGCCCCCG
CAGCTGTGGTGATAGGCGGGGAGACCCACGGCGTGAGCCTCGAGGGGGGCCCGTACCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTACCTACATGTAGGTAGATGCGAACAGCATGTGCTCTGAAAGGTTACACTCCAAGATT
GAAAACAGTGATGAGGGAGAGGAGGGCACTGAACTTTTTCCATCAGAGAATTCTTTCATT
TAGTATGTAATTGAGAATATGGAAAGAATGACAAATGAATGAAAAGTCAAATTATTCCCC
ATGCCCACATCAGGCAAGTGAACTACCTTTTTTGTTTCCTCAGGGATTTTTGCCAAACCT
GACCATGCTAAGATGACATACCCAGAGACTCAGCTTCGCCACACACTGCCCTTATTGTTG
ATTTGTGACAATCTCCGTGACCCTGGGAACCTGGGGACAATTCTGAGATCTGCTGCTGGC
GCAGGCTGCAGCAGAGTGTTACTCACCAAAGGCTGTGTGGATGCCTGGGAGCCCAAGGTG
CTGCGGGCGGGGATGGGTGCGCATTTCCAGGTGCCCATCATCAACAATCTGGACTGGGAA
ACGGTGCCCAAGTACCTGCCCACCGACACCCGGGTCTACGTGGCTGACAACTGTGGCCTC
TACGCACAGGCCCAGGCCCGGGCGTCTACTAAGGCCAGTGACTACGGCTGGGTATGTGAC
CGACGAGCCAAGCTTCACCAGTATGAGGAGGAGGGAGAGGATGTCGAAAGTGGAGCCAGT
AAAGGCTGGCTCCTGAACTCCAGGTCCAGACTTACGACGCGGACTGGACAGAGGCCCCCG
CAGCTGTGGTGATAGGCGGGGAGACCCACGGCGTGAGCCTCGAGGGGGGCCCGTACCCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34304046|ref|NP_899086.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34304046|ref|NP_899086.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               390-508, - strand, RNAz p=0.991035
               

               
               629-764, + strand, RNAz p=0.847365

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               390-508, - strand, RNAz p=0.991035
               

               
               629-764, + strand, RNAz p=0.847365

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               390-764, gnl|bosTau2|chr19 (16515580-16515208)
               

               
               390-764, gnl|Hg17|chr17 (641522-641891)
               

               
               390-764, gnl|Mm7|chr11 (76331467-76331830)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               390-764, gnl|bosTau2|chr19 (16515580-16515208)
               

               
               390-764, gnl|Hg17|chr17 (641522-641891)
               

               
               390-764, gnl|Mm7|chr11 (76331467-76331830)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	390-508, - strand, RNAz p=0.991035
	629-764, + strand, RNAz p=0.847365

	390-764, gnl\|bosTau2\|chr19 (16515580-16515208)
	390-764, gnl\|Hg17\|chr17 (641522-641891)
	390-764, gnl\|Mm7\|chr11 (76331467-76331830)