Non-Coding RNA Search

Ss1.1-Pig1-89K04.5

Sequence:


               
               AGATCACCACGCTGATCATCTCCAAGAAGGAGCGCATGCTGCAGAAGGGCTCCGGCTTCC
ACCTGGACCTGCTGCTCATCGTGGCCATGGGCGGCATCTGTGCCCTCTTTGGCCTGCCCT
GGTTGGCGGCTGCCACCGTCCGCTCCGTCACGCACGCCAACGCACTCACGGTCATGAGCA
AGGCCGTGGCGCCTGGGGACAAGCCCAAGATCCAGGAGGTCAAGGAGCAGCGGGTGACAG
GGCTGCTGGTGGCCCTGCTCGTGGGCCTCTCCTTGGTCATCGGGGATCTGCTTCGGCAGA
TCCCCCTGGCTGTGCTCTTTGGGATTTTCCTGTACATGGGTGTCACCTCCCTTAACGGAA
TCCAGTTCTACGAGCGGCTGCACCTGCTGCTCATGCCACCCAAACACCACCCAGACGTCA
CCTACGTCAAGAAGGTTCGGACCCTCCGTATGCACCTGTTCACGGCCCTGCAGCTGCTCT
GCCTGGCCCTGCTCTGGGCCGTCATGTCCACGGCCGCCTCCCTGGCCTTCCCCTTCATCC
TCATCCTCACGGTGCCGCTGCGCATGGTCGTGCTCACCCGCATCTTCACCGAGCGGGAGA
TGAAATGCCTGGATGCTAATGAGGCCGAGCCGGTGTTCGATGAGCGGGAGGGTGTGGACG
AGTACAACGAGATGCCCATGCCTGTGTAGCTGCTGCCTGGACGGACAGCCGAGGGACTGA
TGGACAGAGGGAACGGGGCTGGGGGGTGCTCTCCCCACCCACCTCCCTCCTCCTTTTTAT
TTAAGTGAATAATTTAAAGTCCCCTTCCCCCCTTCCCCCTCCCCGCAGTAAAGTGCTTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATCACCACGCTGATCATCTCCAAGAAGGAGCGCATGCTGCAGAAGGGCTCCGGCTTCC
ACCTGGACCTGCTGCTCATCGTGGCCATGGGCGGCATCTGTGCCCTCTTTGGCCTGCCCT
GGTTGGCGGCTGCCACCGTCCGCTCCGTCACGCACGCCAACGCACTCACGGTCATGAGCA
AGGCCGTGGCGCCTGGGGACAAGCCCAAGATCCAGGAGGTCAAGGAGCAGCGGGTGACAG
GGCTGCTGGTGGCCCTGCTCGTGGGCCTCTCCTTGGTCATCGGGGATCTGCTTCGGCAGA
TCCCCCTGGCTGTGCTCTTTGGGATTTTCCTGTACATGGGTGTCACCTCCCTTAACGGAA
TCCAGTTCTACGAGCGGCTGCACCTGCTGCTCATGCCACCCAAACACCACCCAGACGTCA
CCTACGTCAAGAAGGTTCGGACCCTCCGTATGCACCTGTTCACGGCCCTGCAGCTGCTCT
GCCTGGCCCTGCTCTGGGCCGTCATGTCCACGGCCGCCTCCCTGGCCTTCCCCTTCATCC
TCATCCTCACGGTGCCGCTGCGCATGGTCGTGCTCACCCGCATCTTCACCGAGCGGGAGA
TGAAATGCCTGGATGCTAATGAGGCCGAGCCGGTGTTCGATGAGCGGGAGGGTGTGGACG
AGTACAACGAGATGCCCATGCCTGTGTAGCTGCTGCCTGGACGGACAGCCGAGGGACTGA
TGGACAGAGGGAACGGGGCTGGGGGGTGCTCTCCCCACCCACCTCCCTCCTCCTTTTTAT
TTAAGTGAATAATTTAAAGTCCCCTTCCCCCCTTCCCCCTCCCCGCAGTAAAGTGCTTCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               46-165, + strand, RNAz p=0.53147

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               46-165, + strand, RNAz p=0.53147

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               40-126, + strand, RNAmicro p=0.990624

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               40-126, + strand, RNAmicro p=0.990624

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-265, gnl|bosTau2|chr19 (38045524-38045782)
               

               
               7-265, gnl|Hg17|chr17 (39686269-39686011)
               

               
               7-265, gnl|Mm7|chr11 (102461735-102461477)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-265, gnl|bosTau2|chr19 (38045524-38045782)
               

               
               7-265, gnl|Hg17|chr17 (39686269-39686011)
               

               
               7-265, gnl|Mm7|chr11 (102461735-102461477)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               jej (0.197844)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	7-265, gnl\|bosTau2\|chr19 (38045524-38045782)
	7-265, gnl\|Hg17\|chr17 (39686269-39686011)
	7-265, gnl\|Mm7\|chr11 (102461735-102461477)

	jej (0.197844)
	cag (0.151194)
	nmm (0.132802)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	ecc (0.115035)