Non-Coding RNA Search

Ss1.1-Pig1-8P18.5

Sequence:


               
               CCAGCATACCCACCTTGCTCAACTCGTTAGCAAACCCAGGCCCATTCCCTCTTGTCAGTT
CATTCATCCTTTGATGAGTTGTTTGGGGATGCCCTCTTGGTCACCTGTGTTTAGGTACAG
ATGACCAAATTCATGCAGCTTGATTGCCGACTCTGTCTTCAGAGGGCCATCTCATTTCAT
TAAGGTGGCTCATGGAAAGAAGTTTCTCTTGGGTCTATTTTGCATTCTGGCAAACAAGAA
GGAAGCCCTCACTGGGATTATTTTTGTCACCAAACTTTTATTCCTTTGCTTAACTTTTTA
TATTCCACAAAATACCCTAAAAAGTCGTTATGTGTAATGTGTAATGCTTTGCATTTAGAG
GTATGAGAGTGTCACTCTGGCTCAGGTGTATTGTAATAATGTTTATAATTAGGCTTTTAG
ATTATCTTCCTAAGCTAAAGAAAGGACACTATTCTTATGTTTATTTATGTTGGGCTTTGG
AATACTATTTTGAAATGACCTATACTTGAAGTGATGAAGCTCTGTGTAGATGAGCTGGTC
TGAAGTGGGGGAAAAAAACTAACTTCTTTTATTTCTTATTCCTAGTTGGAGACAGTTGGC
TTGACTTCTCTGTCTGGTGTAACGTACTGGTCTACTCCTGTGCCCCTTGGTCTTTACTCT
CATTTAAGAAAAATAGTCATATGTCACTGTGTACCCAACTTCTTTGCAATTTATAATCTC
CTCCTCCCCAAATCTAAGTAATCACAGAAAAGAAGATTTCACAGAGCCGTCTGTCCCTGA
TTTTCTATCCCAGTCAGCAGCCTTTCTGGTCAAAGCAGATTTAAAAAATGTTTTCCATTA
GAGCTTTACAGTTTGCAAAAGTGCTTTGTGGACGTTTTCTAAACATGGCAAAATACAGTT
TGCTAATTAGGTTTCAATTGGCTAATGGGGAATTTTTCTTTTTTTTAATGATCAGTATAT
CTTGGAAGAATCTTGCTGCAACCCAATGGCATCTCCCCCCTCCCCTTTGGACACTTCTGC
AATTATTAGTTGATTCACAGTACAAAACAGGATACAAAGTAGGAGGAAAACAGTGCTATA
GCATTATAATTACTAGTTAAAAATAGACTTTAGAACTAAGTGGTTGATTATAAGATTTAC
ATGGAAAGCAAAGAAGGAAAAATTATATTTTTAAAGAAAAAGAGAATATTCAGGCTTTAT
TTCTGGTATGAAGTTTATATTTTTAAAAAAATCCTATATTATCACACCAGAGATTTTAGA
TTTCTTTTCTGGTTACAAGCATTGCTGGTAGTTGGATTATATTTTTATTGTATTCATTTC
TCTTAGGGGGAAAATTGTAAAGAAAACAAAAGGTTCCAGATGAAATGTATCCTAGAAATA
AAAGTTGAAAGATTCTTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCATACCCACCTTGCTCAACTCGTTAGCAAACCCAGGCCCATTCCCTCTTGTCAGTT
CATTCATCCTTTGATGAGTTGTTTGGGGATGCCCTCTTGGTCACCTGTGTTTAGGTACAG
ATGACCAAATTCATGCAGCTTGATTGCCGACTCTGTCTTCAGAGGGCCATCTCATTTCAT
TAAGGTGGCTCATGGAAAGAAGTTTCTCTTGGGTCTATTTTGCATTCTGGCAAACAAGAA
GGAAGCCCTCACTGGGATTATTTTTGTCACCAAACTTTTATTCCTTTGCTTAACTTTTTA
TATTCCACAAAATACCCTAAAAAGTCGTTATGTGTAATGTGTAATGCTTTGCATTTAGAG
GTATGAGAGTGTCACTCTGGCTCAGGTGTATTGTAATAATGTTTATAATTAGGCTTTTAG
ATTATCTTCCTAAGCTAAAGAAAGGACACTATTCTTATGTTTATTTATGTTGGGCTTTGG
AATACTATTTTGAAATGACCTATACTTGAAGTGATGAAGCTCTGTGTAGATGAGCTGGTC
TGAAGTGGGGGAAAAAAACTAACTTCTTTTATTTCTTATTCCTAGTTGGAGACAGTTGGC
TTGACTTCTCTGTCTGGTGTAACGTACTGGTCTACTCCTGTGCCCCTTGGTCTTTACTCT
CATTTAAGAAAAATAGTCATATGTCACTGTGTACCCAACTTCTTTGCAATTTATAATCTC
CTCCTCCCCAAATCTAAGTAATCACAGAAAAGAAGATTTCACAGAGCCGTCTGTCCCTGA
TTTTCTATCCCAGTCAGCAGCCTTTCTGGTCAAAGCAGATTTAAAAAATGTTTTCCATTA
GAGCTTTACAGTTTGCAAAAGTGCTTTGTGGACGTTTTCTAAACATGGCAAAATACAGTT
TGCTAATTAGGTTTCAATTGGCTAATGGGGAATTTTTCTTTTTTTTAATGATCAGTATAT
CTTGGAAGAATCTTGCTGCAACCCAATGGCATCTCCCCCCTCCCCTTTGGACACTTCTGC
AATTATTAGTTGATTCACAGTACAAAACAGGATACAAAGTAGGAGGAAAACAGTGCTATA
GCATTATAATTACTAGTTAAAAATAGACTTTAGAACTAAGTGGTTGATTATAAGATTTAC
ATGGAAAGCAAAGAAGGAAAAATTATATTTTTAAAGAAAAAGAGAATATTCAGGCTTTAT
TTCTGGTATGAAGTTTATATTTTTAAAAAAATCCTATATTATCACACCAGAGATTTTAGA
TTTCTTTTCTGGTTACAAGCATTGCTGGTAGTTGGATTATATTTTTATTGTATTCATTTC
TCTTAGGGGGAAAATTGTAAAGAAAACAAAAGGTTCCAGATGAAATGTATCCTAGAAATA
AAAGTTGAAAGATTCTTAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               356-466, + strand, RNAz p=0.541227

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-466, + strand, RNAz p=0.541227

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-510, gnl|bosTau2|chr22 (6081219-6081691)
               

               
               2-510, gnl|Mm7|chr9 (113358873-113358385)
               


               
               533-1398, gnl|bosTau2|chr22 (6081693-6082558)
               

               
               533-1398, gnl|Hg17|chr3 (33885338-33886199)
               

               
               533-1398, gnl|Mm7|chr9 (113358383-113357542)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-510, gnl|bosTau2|chr22 (6081219-6081691)
               

               
               2-510, gnl|Mm7|chr9 (113358873-113358385)
               


               
               533-1398, gnl|bosTau2|chr22 (6081693-6082558)
               

               
               533-1398, gnl|Hg17|chr3 (33885338-33886199)
               

               
               533-1398, gnl|Mm7|chr9 (113358383-113357542)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               liv (0.292569)
               

               
               spl (0.286369)
               

               
               tra (0.246184)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               tra (0.246184)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	2-510, gnl\|bosTau2\|chr22 (6081219-6081691)
	2-510, gnl\|Mm7\|chr9 (113358873-113358385)

	533-1398, gnl\|bosTau2\|chr22 (6081693-6082558)
	533-1398, gnl\|Hg17\|chr3 (33885338-33886199)
	533-1398, gnl\|Mm7\|chr9 (113358383-113357542)

	liv (0.292569)
	spl (0.286369)
	tra (0.246184)
	sag (0.182715)
	cut (0.169924)
	fhi (0.169578)
	fat (0.147427)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	eru (0.120048)
	med (0.116252)
	eje (0.0988338)