Ss1.1-Pig1-90K01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCACTAGAACTCCATGAAGAATTTGGCTATAATGCAGACACTCAGAAGCTTCTGGCTA AAAATGGAGAGACTCTTCTAGGAGCCATTAATTTTTTCATTGCCAGTGTGAACACTTTGG TGAATAAAACAATTGAAGATACATTAATGACTGTGAAACAGTATGAAAGTGCCAGAATTG AATACGATGCATATCGCACTGACTTGGAAGAACTGAATCTTGGACCACGTGATGCAAACA CTCTGCCAAAGATTGAGCAATCACAGCATCTGTTCCAAGCACATAAGGAAAAATATGATA AAATGCGCAATGATGTTTCTATCAAGTTGAAATTTCTTGAAGAAAATAAGGTTAAAGTCT TGCACAATCAGCTGGTCCTTTTCCACAATGCCATTGCCGCTTACTTTGCTGGGAATCAGA AGCAGCTTGAACAGACACTTAAACAGTTCCATATCAAATTGAAAACCCCTGGAGTGGACG CCCCATCTTGGCTTGAAGAACAGTAAAAATCACACCTGGAAAAGAAAGAAAAGGAAGTCA TATTGTTATATTTCTAAACAAACCTAATAAGAATTAAATGGAAATGGGAGAAGAGGGAAA GGGTGACAGCCATTATAGTGATTCTTGCACAAACAGCTTTAATTTTTCCCTATTTCATAC TTTAACAATTGAACTGTTAAATTTGATGGGAAGGTGGGTGTTTTAATCTAAACATAATTT CTATAATCTGAACACAATAATTCTCCATTTTGAGAAATCCTTTTGTATTGTGAAGGTTGA TGGCTATTTCTCTAGTTTGAAAACACCTAATATAGATTTGCACTGACAAGATAAAAATTC GAGGTTTTTGGTCCCACAGGTGAGGACCAGTCGTAACTTTTCAAGGGAGGTTTACATGAT TTGTATCAACATCAGATATTTTATATATGAACATATTAAACATCTTTAAGAGAGTCATTT TCATCTATTGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCACTAGAACTCCATGAAGAATTTGGCTATAATGCAGACACTCAGAAGCTTCTGGCTA AAAATGGAGAGACTCTTCTAGGAGCCATTAATTTTTTCATTGCCAGTGTGAACACTTTGG TGAATAAAACAATTGAAGATACATTAATGACTGTGAAACAGTATGAAAGTGCCAGAATTG AATACGATGCATATCGCACTGACTTGGAAGAACTGAATCTTGGACCACGTGATGCAAACA CTCTGCCAAAGATTGAGCAATCACAGCATCTGTTCCAAGCACATAAGGAAAAATATGATA AAATGCGCAATGATGTTTCTATCAAGTTGAAATTTCTTGAAGAAAATAAGGTTAAAGTCT TGCACAATCAGCTGGTCCTTTTCCACAATGCCATTGCCGCTTACTTTGCTGGGAATCAGA AGCAGCTTGAACAGACACTTAAACAGTTCCATATCAAATTGAAAACCCCTGGAGTGGACG CCCCATCTTGGCTTGAAGAACAGTAAAAATCACACCTGGAAAAGAAAGAAAAGGAAGTCA TATTGTTATATTTCTAAACAAACCTAATAAGAATTAAATGGAAATGGGAGAAGAGGGAAA GGGTGACAGCCATTATAGTGATTCTTGCACAAACAGCTTTAATTTTTCCCTATTTCATAC TTTAACAATTGAACTGTTAAATTTGATGGGAAGGTGGGTGTTTTAATCTAAACATAATTT CTATAATCTGAACACAATAATTCTCCATTTTGAGAAATCCTTTTGTATTGTGAAGGTTGA TGGCTATTTCTCTAGTTTGAAAACACCTAATATAGATTTGCACTGACAAGATAAAAATTC GAGGTTTTTGGTCCCACAGGTGAGGACCAGTCGTAACTTTTCAAGGGAGGTTTACATGAT TTGTATCAACATCAGATATTTTATATATGAACATATTAAACATCTTTAAGAGAGTCATTT TCATCTATTGTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 15-175, gnl|bosTau2|chr15 (28750068-28749908) | |
| 15-175, gnl|canFam2|chr21 (32982138-32982329) | |
| 15-175, gnl|danRer3|chr10 (18198272-18198082) | |
| 15-175, gnl|dasNov1|scaffold_126118 (575-766) | |
| 15-175, gnl|echTel1|scaffold_311388 (123766-123953) | |
| 15-175, gnl|fr1|chrUn (13531520-13531341) | |
| 15-175, gnl|galGal2|chr1 (188031792-188031615) | |
| 15-175, gnl|hg17|chr11 (6455840-6456031) | |
| 15-175, gnl|Hg17|chr11 (6456007-6455847) | |
| 15-175, gnl|loxAfr1|scaffold_11211 (7992-8183) | |
| 15-175, gnl|mm7|chr7 (101693535-101693726) | |
| 15-175, gnl|Mm7|chr7 (101693702-101693542) | |
| 15-175, gnl|monDom2|scaffold_43 (18604169-18603976) | |
| 15-175, gnl|oryCun1|scaffold_214888 (108157-107970) | |
| 15-175, gnl|panTro1|chr9 (6598736-6598927) | |
| 15-175, gnl|rheMac2|chr14 (65726234-65726043) | |
| 15-175, gnl|rn3|chr1 (163461823-163462014) | |
| 15-175, gnl|tetNig1|chr16 (4967059-4967226) | |
| 15-175, gnl|xenTro1|scaffold_1752 (57495-57678) | |
| 349-504, gnl|bosTau2|chr15 (28749143-28748988) | |
| 349-504, gnl|Hg17|chr11 (6455076-6454921) | |
| 349-504, gnl|Mm7|chr7 (101692816-101692661) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 15-175, gnl|bosTau2|chr15 (28750068-28749908) | |
| 15-175, gnl|canFam2|chr21 (32982138-32982329) | |
| 15-175, gnl|danRer3|chr10 (18198272-18198082) | |
| 15-175, gnl|dasNov1|scaffold_126118 (575-766) | |
| 15-175, gnl|echTel1|scaffold_311388 (123766-123953) | |
| 15-175, gnl|fr1|chrUn (13531520-13531341) | |
| 15-175, gnl|galGal2|chr1 (188031792-188031615) | |
| 15-175, gnl|hg17|chr11 (6455840-6456031) | |
| 15-175, gnl|Hg17|chr11 (6456007-6455847) | |
| 15-175, gnl|loxAfr1|scaffold_11211 (7992-8183) | |
| 15-175, gnl|mm7|chr7 (101693535-101693726) | |
| 15-175, gnl|Mm7|chr7 (101693702-101693542) | |
| 15-175, gnl|monDom2|scaffold_43 (18604169-18603976) | |
| 15-175, gnl|oryCun1|scaffold_214888 (108157-107970) | |
| 15-175, gnl|panTro1|chr9 (6598736-6598927) | |
| 15-175, gnl|rheMac2|chr14 (65726234-65726043) | |
| 15-175, gnl|rn3|chr1 (163461823-163462014) | |
| 15-175, gnl|tetNig1|chr16 (4967059-4967226) | |
| 15-175, gnl|xenTro1|scaffold_1752 (57495-57678) | |
| 349-504, gnl|bosTau2|chr15 (28749143-28748988) | |
| 349-504, gnl|Hg17|chr11 (6455076-6454921) | |
| 349-504, gnl|Mm7|chr7 (101692816-101692661) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| lun (0.150489) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.150489) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| cty (0.10408) |