Non-Coding RNA Search

Ss1.1-Pig1-90L19.5

Sequence:


               
               AGTGGACTCTGGGGATGAGAAGCGGCTGACTCTGGGCCACAGCAAGCTGGACCTCATCAC
CAAGTATCATCAATTGCAGGGCACCAGGCAGGGACCTGAGCCTGGCCTCCTACGGGGCCC
CACAGGTGGCCATCACAATGGCAATAGCAACGGCCTGTCTGAGAATGAGAAACGGTTGAC
CCTGGGCCACAGCAAACTGGACCTCATCACTAAGTACAACAAGTCCAAGTTCAAGCTGCT
CCGAAGCCGCTTTGAGTCCTAGTCCTGCTCCTAGAAAGGACCTAACTGTCCTCCATCTAC
TGAAACTCTAGTTTTGCTCAGGTCCCAGAATCATGGGTAGGAGCTTGGGCAGGGGCTGTA
TGGGGAGGAGAGGGAATCTAGAAGCCCAGGTTAGCTATTCCCTCAGCTCAGGATTCTTGC
CCACACGCACATGCACACACACAGGGAAACAGAAGCCACGGTTACTTGGCACCTGCCATT
TGTCACTATGCTGGGCACATCACATCATTACATCTTATCCTTCATCCTCACAACACCCGA
CAAGATAGACATCTAGTAGTTATACAATTCTAGGATCATAAGTATTATCTTCCCTATATT
ATAAATAAATATGGAGGCTGAGACCCAGCCAGTTTGATGACTTACTTGGAATCAGGTCCA
GGTAAGTGGCAGGGGCTCAAACCTGTGTCTCTGACTCTTAATTTCTTATGACTGTGTTTC
TGCAGAGACAGGACACACAATATCAACAGTTCACATGTCCCCATGCACTTGAAATCCATA
TACCATAGAGATACCTCCAAATGCCTGCACAATATATACAGCACACTGACAGGATGCACA
GCCACAAACTGCACACCCACCAATGCAGTCCCTGCAATAAACCAAAACACTCAGGATTCT
AGTTATAGGTACTCAGTAAATGCCATTCGGCTAAATAAATGGCTACATTCCGTGCACACC
ATAGATCATTCGGGATCCATCGACCATAAATATGCACATAACCACACACACAAACAAGCG
TGCATGCACCAACCAGTGTCTCTTTGTAAGCTGTGTATCCAGTCCTATGCTGTCATACCA
TAAGGCTGACAAAAGCATCAGATTCAGTCCCTGGGAGACAAGGATTAAATGCATAAACCA
TTGGTGAGCAAGACAGAGCTGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGACTCTGGGGATGAGAAGCGGCTGACTCTGGGCCACAGCAAGCTGGACCTCATCAC
CAAGTATCATCAATTGCAGGGCACCAGGCAGGGACCTGAGCCTGGCCTCCTACGGGGCCC
CACAGGTGGCCATCACAATGGCAATAGCAACGGCCTGTCTGAGAATGAGAAACGGTTGAC
CCTGGGCCACAGCAAACTGGACCTCATCACTAAGTACAACAAGTCCAAGTTCAAGCTGCT
CCGAAGCCGCTTTGAGTCCTAGTCCTGCTCCTAGAAAGGACCTAACTGTCCTCCATCTAC
TGAAACTCTAGTTTTGCTCAGGTCCCAGAATCATGGGTAGGAGCTTGGGCAGGGGCTGTA
TGGGGAGGAGAGGGAATCTAGAAGCCCAGGTTAGCTATTCCCTCAGCTCAGGATTCTTGC
CCACACGCACATGCACACACACAGGGAAACAGAAGCCACGGTTACTTGGCACCTGCCATT
TGTCACTATGCTGGGCACATCACATCATTACATCTTATCCTTCATCCTCACAACACCCGA
CAAGATAGACATCTAGTAGTTATACAATTCTAGGATCATAAGTATTATCTTCCCTATATT
ATAAATAAATATGGAGGCTGAGACCCAGCCAGTTTGATGACTTACTTGGAATCAGGTCCA
GGTAAGTGGCAGGGGCTCAAACCTGTGTCTCTGACTCTTAATTTCTTATGACTGTGTTTC
TGCAGAGACAGGACACACAATATCAACAGTTCACATGTCCCCATGCACTTGAAATCCATA
TACCATAGAGATACCTCCAAATGCCTGCACAATATATACAGCACACTGACAGGATGCACA
GCCACAAACTGCACACCCACCAATGCAGTCCCTGCAATAAACCAAAACACTCAGGATTCT
AGTTATAGGTACTCAGTAAATGCCATTCGGCTAAATAAATGGCTACATTCCGTGCACACC
ATAGATCATTCGGGATCCATCGACCATAAATATGCACATAACCACACACACAAACAAGCG
TGCATGCACCAACCAGTGTCTCTTTGTAAGCTGTGTATCCAGTCCTATGCTGTCATACCA
TAAGGCTGACAAAAGCATCAGATTCAGTCCCTGGGAGACAAGGATTAAATGCATAAACCA
TTGGTGAGCAAGACAGAGCTGTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               908-1010, - strand, RNAz p=0.644595

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               908-1010, - strand, RNAz p=0.644595

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1146, gnl|bosTau2|chr13 (45179851-45180966)
               

               
               1-1146, gnl|Mm7|chr2 (155570302-155568778)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1146, gnl|bosTau2|chr13 (45179851-45180966)
               

               
               1-1146, gnl|Mm7|chr2 (155570302-155568778)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pro (0.512033)
               

               
               nep (0.36785)
               

               
               col (0.195008)
               

               
               pty (0.142714)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               nep (0.36785)
               

               
               col (0.195008)
               

               
               pty (0.142714)

	1-1146, gnl\|bosTau2\|chr13 (45179851-45180966)
	1-1146, gnl\|Mm7\|chr2 (155570302-155568778)